Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cerataphis_20brasiliensis_20yeast- like_20symbiont_20[genbank_20GCA_5F000372705.1_202013-04-22] 1,181 sequences; 25,465,455 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq780 140 3e-28 >seq780 Length=34333 Score = 140 bits (154), Expect = 3e-28 Identities = 205/290 (71%), Gaps = 9/290 (3%) Strand=Plus/Minus Query 17234 ATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGA 17293 ||||| |||||||| || ||| ||| | |||||||| ||||||||||| |||||| Sbjct 30303 ATATATGTATCGATCAGGAGGGAGTATGTCTCGGAGTGGATGTTCTCCATCATGATCTGA 30244 Query 17294 AATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGA 17353 |||||||| ||||| ||||| || | || ||||| || || ||| || || | | Sbjct 30243 AATCCGTAGAAGCAACGGGCCTCGGGGATCTGAACCTCGCCGCTGAACCGCTCAACCAAG 30184 Query 17354 TTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATAT 17413 |||||||| ||||||||||| ||||| ||||| |||| || || || || || Sbjct 30183 TTTTCGTTGACGATGCCGTCCGAGGCGGCAAAAAAGGCCAGGATGTGGGAAACAAAGTAC 30124 Query 17414 TTTTCGTCCGGTGTAAGAACGCG------CCAGTCCTTTAAATCTTTGGATATATCCACT 17467 |||||||| | || ||| |||||| | || || ||||| | ||| | | Sbjct 30123 TTTTCGTCATCATTCAG---GCGGTTGTTCCAGTCGTGCAAGTCCTTGGAGAGATCGATT 30067 Query 17468 TCTTCGGGGGTCCAAAAACTAGCCACTGCCTTTTTATACATATTCCAAAT 17517 || |||| |||||||| ||| ||||||| || ||||| | |||||| Sbjct 30066 TCCTCGGCTGTCCAAAAGGAGGCCTCTGCCTTCTTGTACATTTGCCAAAT 30017 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517537959733080