Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cerataphis_20brasiliensis_20yeast- like_20symbiont_20[genbank_20GCA_5F000372705.1_202013-04-22] 1,181 sequences; 25,465,455 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq677 170 2e-37 seq780 102 1e-16 >seq677 Length=7370 Score = 170 bits (188), Expect = 2e-37 Identities = 461/703 (66%), Gaps = 22/703 (3%) Strand=Plus/Plus Query 53981 CCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATA 54040 || || ||||| | || ||||| | || ||| || |||| | || ||| || ||||| Sbjct 5689 CCGGGGCATTCGTTGGGGCACATGAGCGTCCAATCGCCGTTTTTCTCCACGCGCTTCATG 5748 Query 54041 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCT 54100 || || || |||||||| || || | || || || | || | | ||||| || || Sbjct 5749 AACAGGTCCGGAATCCACAGGGCCAGGAAGAGGTCGCGGGCCCGAACCTCCTCCTTGCCA 5808 Query 54101 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 54160 ||||| ||||| || ||| | | | ||| | |||||||| |||||||||||| Sbjct 5809 TGGTTCTTGCGCAGATCCAGAAACTCAAACACATCGGCGTGCCACGGCTCCAAGTATATG 5868 Query 54161 GTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 54220 | | | || ||||| ||||| || ||||| || | ||| | || || || || | Sbjct 5869 GCAAAGGCACCTGGCCGCTTGTTGCCGCCCTGGTCGACGTAGCGGGCCGTATTGTTGAAG 5928 Query 54221 ACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCA 54280 || | | ||| ||||| | ||| || || | || ||||| |||| || || || Sbjct 5929 ACACGAAGCATGGGAATGACACCGTTCGAAGTCCCGTTGGTGCCGGCAATGTAAGAACCG 5988 Query 54281 CTGGCACGAAT--ATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATG 54338 | ||||| || | | ||| || || || || || ||||| || ||||| | | Sbjct 5989 GTAGCACGGATCCGATGCACGTTG--AGCCCGATGCCGCCGGCCATCTTGGAGATCATGG 6046 Query 54339 CGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAA 54398 ||||| || | ||| || ||||||||||| || || || ||| |||||| || || | Sbjct 6047 CGCATGTCTTGAGCGTGTCGTAGATGCCCTCGATGCTGTCCTCCTTCATGTCAACGAGGA 6106 Query 54399 AACAGCTAGACATTTGGTGAC---GACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGT 54455 ||| ||| | |||| || || || || || || | || || || || | Sbjct 6107 ---AGCACGACGAAAGCTGACACTGAGGCGTGCCGGCGTTGAACAGCGTCGGCGACGCAT 6163 Query 54456 GCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATAT------ 54509 | || || | || || | || ||||||||||||| || ||| |||| Sbjct 6164 GGGTGAAGAACTTGCTGGACATGAGGTTGTACGTCTCGAGGACTCGGTCGATATTGCCGC 6223 Query 54510 CCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCT 54569 ||||| || || || || || ||||| | |||||| ||||| | |||||||||| Sbjct 6224 CCCAT------ATACCCACGGCAACGCGCATGATCATGTGTTGAGGGCGCTCAACGATCT 6277 Query 54570 TGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATG 54629 || || | || ||||| || || ||||| || || || |||||||| | ||| Sbjct 6278 TGCCGTCGAGCTTGAGCAAATAAGAACGTTCCAGTGTCTTGAAGCCAAAATACTGGTAGT 6337 Query 54630 AAAAGTCTCGTTCGTAAATAATAACTGAGTTGAGTTTATCCTT 54672 |||||| || || || || || | |||| ||| ||||||| Sbjct 6338 TAAAGTCCCGGTCATAGATGATGGCCGAGTCGAGCCTATCCTT 6380 >seq780 Length=34333 Score = 102 bits (112), Expect = 1e-16 Identities = 222/332 (67%), Gaps = 3/332 (1%) Strand=Plus/Minus Query 24357 GTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATC 24416 || || |||||||| ||||||||| | | | | || || | ||||||||| ||| Sbjct 30348 GTTTCAATAGCATTGAAGAGATAGGTCCGCTGGGCATTCTCCTTGATATATGTATCGATC 30289 Query 24417 AAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACAT 24476 | || || | || || || ||||| || || || |||||||||||||| || Sbjct 30288 AGGAGGGAGTATGTCTCGGAGTGGATGTTCTCCATCATGATCTGAAATCCGTAGAAGCAA 30229 Query 24477 CTAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATT 24536 | ||||||| ||||| || || | || || || | || ||||| || || || Sbjct 30228 CGGGCCTCGGGGATCTGAACCTCGCCGCTGAACCGCTCAACCAAGTTTTCGTTGACGATG 30169 Query 24537 CCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT 24596 ||||| ||| |||||||| |||| | || | ||| || |||||||| | Sbjct 30168 CCGTCCGAGGCGGCAAAAAAGGCCAGGATGTGGGAAACAAAGTACTTTTCGTCATCATTC 30109 Query 24597 A---GTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAAT 24653 | | || ||||| || | | || || || | ||| | ||| || |||||||||| Sbjct 30108 AGGCGGTTGTTCCAGTCGTGCAAGTCCTTGGAGAGATCGATTTCCTCGGCTGTCCAAAAG 30049 Query 24654 GATGCCTCTGCCTTTTTATACATATTCCAGAT 24685 || ||||||||||| || ||||| | ||| || Sbjct 30048 GAGGCCTCTGCCTTCTTGTACATTTGCCAAAT 30017 Score = 93.3 bits (102), Expect = 5e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 24134 ACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAG 24193 ||| || ||||| ||| | |||||| |||| ||| | |||||||||||| || | Sbjct 30645 ACAGGCAAAATCCGTGTGCAAACCCTCATCTCGCGAAATGAGTTCGTTGGAAAAGGTCAA 30586 Query 24194 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAA 24253 || |||||||||||||| || || ||||| || ||||| ||||| | ||| ||||| Sbjct 30585 GCCAGGCATTAGGCCACGTTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCACTGAAGAA 30526 Query 24254 AATTCCTTCTACTGCCGCAAAGGC 24277 || || || || || |||||||| Sbjct 30525 GATGCCCTCGACCGCAGCAAAGGC 30502 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593712835184880