Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cerataphis_20brasiliensis_20yeast-
like_20symbiont_20[genbank_20GCA_5F000372705.1_202013-04-22] 1,181 sequences; 25,465,455 total letters
Query= NC_001611.1
Length=185578
Score E
Sequences producing significant alignments: (Bits) Value
seq677 170 2e-37
seq780 102 1e-16
>seq677
Length=7370
Score = 170 bits (188), Expect = 2e-37
Identities = 461/703 (66%), Gaps = 22/703 (3%)
Strand=Plus/Plus
Query 53981 CCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATA 54040
|| || ||||| | || ||||| | || ||| || |||| | || ||| || |||||
Sbjct 5689 CCGGGGCATTCGTTGGGGCACATGAGCGTCCAATCGCCGTTTTTCTCCACGCGCTTCATG 5748
Query 54041 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCT 54100
|| || || |||||||| || || | || || || | || | | ||||| || ||
Sbjct 5749 AACAGGTCCGGAATCCACAGGGCCAGGAAGAGGTCGCGGGCCCGAACCTCCTCCTTGCCA 5808
Query 54101 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 54160
||||| ||||| || ||| | | | ||| | |||||||| ||||||||||||
Sbjct 5809 TGGTTCTTGCGCAGATCCAGAAACTCAAACACATCGGCGTGCCACGGCTCCAAGTATATG 5868
Query 54161 GTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 54220
| | | || ||||| ||||| || ||||| || | ||| | || || || || |
Sbjct 5869 GCAAAGGCACCTGGCCGCTTGTTGCCGCCCTGGTCGACGTAGCGGGCCGTATTGTTGAAG 5928
Query 54221 ACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCA 54280
|| | | ||| ||||| | ||| || || | || ||||| |||| || || ||
Sbjct 5929 ACACGAAGCATGGGAATGACACCGTTCGAAGTCCCGTTGGTGCCGGCAATGTAAGAACCG 5988
Query 54281 CTGGCACGAAT--ATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATG 54338
| ||||| || | | ||| || || || || || ||||| || ||||| | |
Sbjct 5989 GTAGCACGGATCCGATGCACGTTG--AGCCCGATGCCGCCGGCCATCTTGGAGATCATGG 6046
Query 54339 CGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAA 54398
||||| || | ||| || ||||||||||| || || || ||| |||||| || || |
Sbjct 6047 CGCATGTCTTGAGCGTGTCGTAGATGCCCTCGATGCTGTCCTCCTTCATGTCAACGAGGA 6106
Query 54399 AACAGCTAGACATTTGGTGAC---GACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGT 54455
||| ||| | |||| || || || || || || | || || || || |
Sbjct 6107 ---AGCACGACGAAAGCTGACACTGAGGCGTGCCGGCGTTGAACAGCGTCGGCGACGCAT 6163
Query 54456 GCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATAT------ 54509
| || || | || || | || ||||||||||||| || ||| ||||
Sbjct 6164 GGGTGAAGAACTTGCTGGACATGAGGTTGTACGTCTCGAGGACTCGGTCGATATTGCCGC 6223
Query 54510 CCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCT 54569
||||| || || || || || ||||| | |||||| ||||| | ||||||||||
Sbjct 6224 CCCAT------ATACCCACGGCAACGCGCATGATCATGTGTTGAGGGCGCTCAACGATCT 6277
Query 54570 TGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATG 54629
|| || | || ||||| || || ||||| || || || |||||||| | |||
Sbjct 6278 TGCCGTCGAGCTTGAGCAAATAAGAACGTTCCAGTGTCTTGAAGCCAAAATACTGGTAGT 6337
Query 54630 AAAAGTCTCGTTCGTAAATAATAACTGAGTTGAGTTTATCCTT 54672
|||||| || || || || || | |||| ||| |||||||
Sbjct 6338 TAAAGTCCCGGTCATAGATGATGGCCGAGTCGAGCCTATCCTT 6380
>seq780
Length=34333
Score = 102 bits (112), Expect = 1e-16
Identities = 222/332 (67%), Gaps = 3/332 (1%)
Strand=Plus/Minus
Query 24357 GTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATC 24416
|| || |||||||| ||||||||| | | | | || || | ||||||||| |||
Sbjct 30348 GTTTCAATAGCATTGAAGAGATAGGTCCGCTGGGCATTCTCCTTGATATATGTATCGATC 30289
Query 24417 AAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACAT 24476
| || || | || || || ||||| || || || |||||||||||||| ||
Sbjct 30288 AGGAGGGAGTATGTCTCGGAGTGGATGTTCTCCATCATGATCTGAAATCCGTAGAAGCAA 30229
Query 24477 CTAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATT 24536
| ||||||| ||||| || || | || || || | || ||||| || || ||
Sbjct 30228 CGGGCCTCGGGGATCTGAACCTCGCCGCTGAACCGCTCAACCAAGTTTTCGTTGACGATG 30169
Query 24537 CCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT 24596
||||| ||| |||||||| |||| | || | ||| || |||||||| |
Sbjct 30168 CCGTCCGAGGCGGCAAAAAAGGCCAGGATGTGGGAAACAAAGTACTTTTCGTCATCATTC 30109
Query 24597 A---GTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAAT 24653
| | || ||||| || | | || || || | ||| | ||| || ||||||||||
Sbjct 30108 AGGCGGTTGTTCCAGTCGTGCAAGTCCTTGGAGAGATCGATTTCCTCGGCTGTCCAAAAG 30049
Query 24654 GATGCCTCTGCCTTTTTATACATATTCCAGAT 24685
|| ||||||||||| || ||||| | ||| ||
Sbjct 30048 GAGGCCTCTGCCTTCTTGTACATTTGCCAAAT 30017
Score = 93.3 bits (102), Expect = 5e-14
Identities = 107/144 (74%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 24134 ACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAG 24193
||| || ||||| ||| | |||||| |||| ||| | |||||||||||| || |
Sbjct 30645 ACAGGCAAAATCCGTGTGCAAACCCTCATCTCGCGAAATGAGTTCGTTGGAAAAGGTCAA 30586
Query 24194 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAA 24253
|| |||||||||||||| || || ||||| || ||||| ||||| | ||| |||||
Sbjct 30585 GCCAGGCATTAGGCCACGTTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCACTGAAGAA 30526
Query 24254 AATTCCTTCTACTGCCGCAAAGGC 24277
|| || || || || ||||||||
Sbjct 30525 GATGCCCTCGACCGCAGCAAAGGC 30502
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 593712835184880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |