Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cerataphis_20brasiliensis_20yeast- like_20symbiont_20[genbank_20GCA_5F000372705.1_202013-04-22] 1,181 sequences; 25,465,455 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq780 150 2e-31 seq574 134 1e-26 seq598 125 7e-24 seq1010 105 7e-18 >seq780 Length=34333 Score = 150 bits (166), Expect = 2e-31 Identities = 204/284 (72%), Gaps = 3/284 (1%) Strand=Plus/Plus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| ||||| ||||| || || ||||| | |||||| | || || Sbjct 30017 ATTTGGCAAATGTACAAGAAGGCAGAGGCCTCCTTTTGGACAGCCGAGGAAATCGATCTC 30076 Query 116696 TCCAAGGACACGAGCGACTGGGAG---CGCTTGAACGACAACGAGCGCCATTTCATCAAG 116752 ||||||||| | ||||||| | ||| |||| || |||| | || | Sbjct 30077 TCCAAGGACTTGCACGACTGGAACAACCGCCTGAATGATGACGAAAAGTACTTTGTTTCC 30136 Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812 ||| | ||||||||||| |||||| ||||||||||||||||| || |||| ||||| Sbjct 30137 CACATCCTGGCCTTTTTTGCCGCCTCGGACGGCATCGTCAACGAAAACTTGGTTGAGCGG 30196 Query 116813 TTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATG 116872 ||| ||||| ||| | ||||||| || ||||||||||| ||||||||| ||| Sbjct 30197 TTCAGCGGCGAGGTTCAGATCCCCGAGGCCCGTTGCTTCTACGGATTTCAGATCATGATG 30256 Query 116873 GAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTA 116916 |||||| | ||||| || | || || ||| ||||| || || Sbjct 30257 GAGAACATCCACTCCGAGACATACTCCCTCCTGATCGATACATA 30300 Score = 120 bits (132), Expect = 3e-22 Identities = 266/395 (67%), Gaps = 8/395 (2%) Strand=Plus/Plus Query 116984 AAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTG 117043 || ||||| ||||| | ||||||||| | || | | | | || | | ||| || Sbjct 30439 AAAGCCGACTGGGCTATTCGCTGGATCCAGGACAAAAACTCGTCGTTTGCTCAACGCTTG 30498 Query 117044 GTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGG 117103 || ||||| || || ||||||||| ||||||| || || ||| |||| || ||| Sbjct 30499 GTAGCCTTTGCTGCGGTCGAGGGCATCTTCTTCAGTGGTGCCTTTGCCTCCATCTTCTGG 30558 Query 117104 CTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGAC 117163 ||||||||||| ||||| ||||| ||| |||| || |||||| ||||| || | || Sbjct 30559 CTCAAGAAACGTGGCCTAATGCCTGGCTTGACCTTTTCCAACGAACTCATTTCGCGAGAT 30618 Query 117164 GAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGC 117223 |||||| |||| || ||||||||| | || | ||| || | || | ||| Sbjct 30619 GAGGGTTTGCACACGGATTTTGCCTGTCTCCTACACTCGCACTTCAAAAACCGGGCCAGC 30678 Query 117224 GCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACC 117283 | | || || ||| ||||||| || ||| ||||||| || || |||||| Sbjct 30679 AAACAGGTCATCCATGACATCATCACCGATGCCGTCACCATCGAACAAGAATTTCTCACC 30738 Query 117284 GAAGCGCTGCCGGTGCG-TCTGCTGGGACTCAATTGCGAAAC---GATGTCGCAATACAT 117339 ||||| ||||| |||| | || || | || || || |||| ||| || || Sbjct 30739 GAAGCCCTGCC-CTGCGCATTACTCGGCATGAA---CGCCACCTTGATGAAGCAGTATAT 30794 Query 117340 CGAGTTCGTCGCCGACAGGCTGCTGCTCGAGCTGG 117374 ||||||||| |||||| | || || ||| |||| Sbjct 30795 CGAGTTCGTTGCCGACCGCCTTCTAGTCGCCCTGG 30829 >seq574 Length=30825 Score = 134 bits (148), Expect = 1e-26 Identities = 171/233 (73%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || ||||| ||||| |||||||| || || |||||| | || || || | Sbjct 26798 AAGATGCAGATCTTCGTCAAAACCCTCACGGGGAAGACAATCACCCTTGAGGTGGAGTCT 26739 Query 40747 ACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | |||| | | | |||| ||||| || |||| || || |||||||| ||| | || Sbjct 26738 TCTGACACCATCGATAACG-TCAAGTCCAAGATTCAGGATAAGGAGGGCATTCCCCCCGA 26680 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 |||||| || ||||||| || || || ||||| || || | || ||| | | |||||| Sbjct 26679 CCAGCAGCGCCTCATCTTTGCCGGAAAGCAGCTCGAAGATGGCCGAACCATGAGCGACTA 26620 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGCG 40918 |||||||||||||||| ||| ||||| || || ||||| | | || |||| Sbjct 26619 CAACATCCAGAAGGAGAGCACTCTGCACCTCGTCCTGCGCCTTCGCGGTGGCG 26567 >seq598 Length=71582 Score = 125 bits (138), Expect = 7e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||||||||| || ||| | || ||||| || ||||| | || |||||| | || Sbjct 950 ATGCAAATATTCGTCAAGACGTTGACTGGCAAGACGATCACTCTGGAAGTCGAATCGTCC 1009 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | | ||| ||| |||| ||||| |||||||| ||| |||| || Sbjct 1010 GACACCATCGATAATGTGAAGTCAAAGATTCAGGACAAGGAGGGCATTCCCCCGGATCAA 1069 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || |||| || || || ||||| || || | || || || ||||||||| Sbjct 1070 CAGCGCCTGATCTTTGCTGGTAAGCAGCTCGAGGATGGTCGAACTCTGTCCGACTACAAT 1129 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 || ||||| ||| ||||| ||||||| || | || ||| | ||||| Sbjct 1130 ATTCAGAAAGAGTCCACGTTGCATCTTGTCCTTCGTTTGCGCGGCGG 1176 Score = 116 bits (128), Expect = 4e-21 Identities = 157/216 (73%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || | || ||||| || || || | || |||||| | || Sbjct 1178 ATGCAAATCTTCGTCAAGACATTAACCGGCAAGACGATTACGTTGGAAGTCGAATCGTCC 1237 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| ||||| || |||| || || ||||||||||| | ||||| Sbjct 1238 GACACCATCGACAACG-TCAAGTCCAAGATTCAGGATAAGGAGGGCATCCCTCCTGACCA 1296 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || || | ||| || ||||| || || || | || |||||| |||||||| Sbjct 1297 GCAGCGCCTGATATTCGCTGGAAAACAACTTGAGGATGGCCGGACCCTCTCTGACTACAA 1356 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||||||||| ||| |||| |||| || || |||| Sbjct 1357 CATCCAGAAAGAGTCCACTTTGCACCTCGTCCTGCG 1392 >seq1010 Length=27177 Score = 105 bits (116), Expect = 7e-18 Identities = 132/181 (73%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758 |||||||| || || |||||||| ||||||||| |||| ||||| | | |||| | Sbjct 25695 TTCGTAAAGACCCTAACGGGCAAGACCATCACCCTCGAGGTCGAGTCGTCGGACACGATC 25636 Query 40759 CAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818 | | |||| || |||| || || |||||||| || |||| || |||||||| Sbjct 25635 GATAATGTCAAATCCAAGATTCAGGATAAGGAGGGCATTCCTCCGGATCAACAACGACTG 25576 Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878 |||| ||| ||||| ||||| || |||| || || || ||| ||||||||||| ||| Sbjct 25575 ATCTTCGCCGGCAAGCAGCTTGAGGACGGCCGAACGCTGTCCGATTACAACATCCAAAAG 25516 Query 40879 G 40879 | Sbjct 25515 G 25515 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515211594076560