Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cerataphis_20brasiliensis_20yeast- like_20symbiont_20[genbank_20GCA_5F000372705.1_202013-04-22] 1,181 sequences; 25,465,455 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq574 116 3e-21 seq598 113 4e-20 seq1010 104 2e-17 >seq574 Length=30825 Score = 116 bits (128), Expect = 3e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 118547 CTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTA 118606 ||| || || |||||||| |||||||| || || ||| |||||||| ||||| || | Sbjct 26604 CTCCTTCTGGATGTTGTAGTCGCTCATGGTTCGGCCATCTTCGAGCTGCTTTCCGGCAAA 26663 Query 118607 GATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTG 118666 |||||| |||||||| ||||| || ||||||||||| || ||| || || || | Sbjct 26664 GATGAGGCGCTGCTGGTCGGGGGGAATGCCCTCCTTATCCTGAATCTTGGACTTGACGTT 26723 Query 118667 TTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTAC 118726 |||| |||||| | ||| ||||| | ||| | || || || || || ||||| || Sbjct 26724 ATCGATGGTGTCAGAAGACTCCACCTCAAGGGTGATTGTCTTCCCCGTGAGGGTTTTGAC 26783 Query 118727 AAAAATCTGCAT 118738 || |||||||| Sbjct 26784 GAAGATCTGCAT 26795 >seq598 Length=71582 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || |||||||| ||||| ||||| ||| || ||| || |||||||||||| || ||| Sbjct 1146 GTGGACTCTTTCTGAATATTGTAGTCGGACAGAGTTCGACCATCCTCGAGCTGCTTACCA 1087 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || |||| || ||||| ||||| || || |||||||||||||| ||| ||| || Sbjct 1086 GCAAAGATCAGGCGCTGTTGATCCGGGGGAATGCCCTCCTTGTCCTGAATCTTTGACTTC 1027 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | |||| |||||| | ||||| || | || | ||| ||||| |||| || Sbjct 1026 ACATTATCGATGGTGTCGGACGATTCGACTTCCAGAGTGATCGTCTTGCCAGTCAACGTC 967 Query 118722 TTTACAAAAATCTGCAT 118738 || || || || ||||| Sbjct 966 TTGACGAATATTTGCAT 950 Score = 111 bits (122), Expect = 1e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 118548 TCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAG 118607 ||||| |||||||| || ||||||| ||| || ||| || || ||||||||||| | Sbjct 1596 TCTTTCTGAATGTTATAGTCGCTCAGAGTACGTCCATCTTCCAGTTGTTTTCCAGCAAAT 1537 Query 118608 ATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGT 118667 ||||| ||||| || |||||||| ||||| ||||||||| ||||| || || | Sbjct 1536 ATGAGGCGCTGTTGGTCGGGAGGAATGCCTTCCTTGTCTTGTATTTTCGACTTCACGTTG 1477 Query 118668 TCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACA 118727 || | || |||| || || || | ||| | ||| || || |||||||| || ||| Sbjct 1476 TCAATCGTATCCGAAGATTCAACTTCCAAGGTAATCGTCTTTCCCGTCAGAGTCTTGACA 1417 Query 118728 AAAATCTGCAT 118738 || || ||||| Sbjct 1416 AAGATTTGCAT 1406 Score = 98.7 bits (108), Expect = 9e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 ||||||| || | | || || | ||| | || |||||||| || |||||||| || Sbjct 1406 TACCTCCACGCAGACGCAGGACGAGGTGCAAAGTGGACTCTTTCTGGATGTTGTAGTCAG 1347 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | || || |||||| || |||||||||||| | || || |||||||| || |||| Sbjct 1346 AGAGGGTCCGGCCATCCTCAAGTTGTTTTCCAGCGAATATCAGGCGCTGCTGGTCAGGAG 1287 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | ||||||||||| || ||| || || || | |||| |||||| | |||| Sbjct 1286 GGATGCCCTCCTTATCCTGAATCTTGGACTTGACGTTGTCGATGGTGTCGGACGATTCGA 1227 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | || | || | ||| |||||||| | || || || || || ||||| Sbjct 1226 CTTCCAACGTAATCGTCTTGCCGGTTAATGTCTTGACGAAGATTTGCAT 1178 >seq1010 Length=27177 Score = 104 bits (114), Expect = 2e-17 Identities = 131/180 (73%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 118551 TTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATG 118610 ||||| |||||||||||| || || || ||||| ||||| || || ||| |||| Sbjct 25517 TTTTGGATGTTGTAATCGGACAGCGTTCGGCCGTCCTCAAGCTGCTTGCCGGCGAAGATC 25576 Query 118611 AGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCG 118670 || || || ||||| ||||| ||||||||||| || ||| || ||| || | ||| Sbjct 25577 AGTCGTTGTTGATCCGGAGGAATGCCCTCCTTATCCTGAATCTTGGATTTGACATTATCG 25636 Query 118671 ACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 118730 | ||||||| ||||||||||| ||| | || ||||| || || || ||||| ||| Sbjct 25637 ATCGTGTCCGACGACTCGACCTCGAGGGTGATGGTCTTGCCCGTTAGGGTCTTTACGAAA 25696 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433824155689252