Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cerataphis_20brasiliensis_20yeast- like_20symbiont_20[genbank_20GCA_5F000372705.1_202013-04-22] 1,181 sequences; 25,465,455 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq598 118 1e-21 seq1010 109 6e-19 seq574 91.5 2e-13 >seq598 Length=71582 Score = 118 bits (130), Expect = 1e-21 Identities = 159/219 (73%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 42966 AAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGC 43025 ||||| | || | |||||| ||| ||| || ||||||||||| || | |||||| || Sbjct 1167 AAACGAAGGACAAGATGCAACGTGGACTCTTTCTGAATATTGTAGTCGGACAGAGTTCGA 1108 Query 43026 TCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCC 43085 | || || |||||||||||||| || || || ||||| || || | || | || |||| Sbjct 1107 CCATCCTCGAGCTGCTTACCAGCAAAGATCAGGCGCTGTTGATCCGGGGGAATGCCCTCC 1048 Query 43086 TTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGT 43144 |||||| ||| | |||| || | | | | |||||| |||||| || || | || Sbjct 1047 TTGTCC-TGAATCTTTGACTTCACATTATCGATGGTGTCGGACGATTCGACTTCCAGAGT 989 Query 43145 GATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||| || ||||| || | |||||| || || |||||||| Sbjct 988 GATCGTCTTGCCAGTCAACGTCTTGACGAATATTTGCAT 950 Score = 114 bits (126), Expect = 1e-20 Identities = 166/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 ||||| | | ||||| || | ||||| ||| ||| || || || ||||| |||| Sbjct 1404 CCTCCACGCAGACGCAGGACGAGGTGCAAAGTGGACTCTTTCTGGATGTTGTAGTCAGAG 1345 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 || ||||| | || || || || || ||||||||||| || ||||||||||| | || Sbjct 1344 AGGGTCCGGCCATCCTCAAGTTGTTTTCCAGCGAATATCAGGCGCTGCTGGTCAGGAGGG 1285 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCG-CCACCGTGTCGCTCGATTCCA 43134 | || |||||| ||| ||| | || | |||| ||| | | | |||||| |||||| | Sbjct 1284 ATGCCCTCCTTATCC-TGAATCTTGGACTTGA-CGTTGTCGATGGTGTCGGACGATTCGA 1227 Query 43135 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 | || | ||| || || ||||| |||| ||||| || ||||||||||| Sbjct 1226 CTTCCAACGTAATCGTCTTGCCGGTTAATGTCTTGACGAAGATTTGCAT 1178 Score = 98.7 bits (108), Expect = 1e-15 Identities = 153/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 |||| ||| | ||||| ||||| || || ||||| || || || |||||| || | Sbjct 1620 CGCAGCACAAGGTGCAAAGTGCTTTCTTTCTGAATGTTATAGTCGCTCAGAGTACGTCCA 1561 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088 || || || || || ||||| |||||||| ||||| ||||||| || | || |||||| Sbjct 1560 TCTTCCAGTTGTTTTCCAGCAAATATGAGGCGCTGTTGGTCGGGAGGAATGCCTTCCTTG 1501 Query 43089 TCCATGATTTTTTGTTTGAGCGTCGCCAC-CGTGTCGCTCGATTCCACATCGACCGTGAT 43147 || ||||| || | ||| | || ||| || ||||| || || | || || Sbjct 1500 TCTTGTATTTTCGACTTCA-CGTTGTCAATCGTATCCGAAGATTCAACTTCCAAGGTAAT 1442 Query 43148 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || ||||| || ||||| |||||||||||||| Sbjct 1441 CGTCTTTCCCGTCAGAGTCTTGACAAAGATTTGCAT 1406 >seq1010 Length=27177 Score = 109 bits (120), Expect = 6e-19 Identities = 135/182 (74%), Gaps = 2/182 (1%) Strand=Plus/Plus Query 42994 CCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATA 43053 ||||||| || |||||||| | ||| || || |||| || |||||||| || ||||| | Sbjct 25515 CCTTTTGGATGTTGTAATCGGACAGCGTTCGGCCGTCCTCAAGCTGCTTGCCGGCGAAGA 25574 Query 43054 TGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTC 43112 | ||||| || || || | || | || |||||| ||| ||| | || | ||||| | Sbjct 25575 TCAGTCGTTGTTGATCCGGAGGAATGCCCTCCTTATCC-TGAATCTTGGATTTGACATTA 25633 Query 43113 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 43172 | | |||||| ||| || || |||| |||||||| ||||||||||| |||||||| Sbjct 25634 TCGATCGTGTCCGACGACTCGACCTCGAGGGTGATGGTCTTGCCCGTTAGGGTCTTTACG 25693 Query 43173 AA 43174 || Sbjct 25694 AA 25695 >seq574 Length=30825 Score = 91.5 bits (100), Expect = 2e-13 Identities = 146/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 42981 TGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGC 43040 |||| ||||||||||| || || ||||| || || || || | || || |||||| Sbjct 26593 TGCAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCTCATGGTTCGGCCATCTTCGAGCTGC 26652 Query 43041 TTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTT 43100 || || || || ||||| ||||||||||||| || | || |||||| ||| ||| | || Sbjct 26653 TTTCCGGCAAAGATGAGGCGCTGCTGGTCGGGGGGAATGCCCTCCTTATCC-TGAATCTT 26711 Query 43101 TG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGT 43159 | |||| | | | ||||| || ||||| || | ||||| || || ||||| Sbjct 26712 GGACTTGACGTTATCGATGGTGTCAGAAGACTCCACCTCAAGGGTGATTGTCTTCCCCGT 26771 Query 43160 TAGCGTCTTTACAAAGATTTGCATTTT 43186 || || || || ||||| ||||| || Sbjct 26772 GAGGGTTTTGACGAAGATCTGCATCTT 26798 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571809158542680