Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cerataphis_20brasiliensis_20yeast- like_20symbiont_20[genbank_20GCA_5F000372705.1_202013-04-22] 1,181 sequences; 25,465,455 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq598 141 7e-29 seq574 125 6e-24 >seq598 Length=71582 Score = 141 bits (156), Expect = 7e-29 Identities = 156/205 (76%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||||| ||||| || ||||||||||| |||||| |||| || | || |||||||| Sbjct 1609 GTGCAAAGTGCTTTCTTTCTGAATGTTATAGTCGCTCAGAGTACGTCCATCTTCCAGTTG 1550 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 |||||| || ||||| | ||||||||||||||||| | || |||||||| ||||| Sbjct 1549 TTTTCCAGCAAATATGAGGCGCTGTTGGTCGGGAGGAATGCCTTCCTTGTCTTGTATTTT 1490 Query 45253 TTGCTTAACCGCCGCCACGC-TGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCG 45311 ||| | || | || | | ||| | || || |||| |||||||||||| |||| Sbjct 1489 CGACTTCA-CGTTGTCAATCGTATCCGAAGATTCAACTTCCAAGGTAATCGTCTTTCCCG 1431 Query 45312 TCAGAGTCTTCACAAAGATTTGCAT 45336 |||||||||| |||||||||||||| Sbjct 1430 TCAGAGTCTTGACAAAGATTTGCAT 1406 Score = 98.7 bits (108), Expect = 8e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||||| ||| ||| ||||| ||||||||||| || || | || || ||||| Sbjct 1381 GTGCAAAGTGGACTCTTTCTGGATGTTGTAGTCAGAGAGGGTCCGGCCATCCTCAAGTTG 1322 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 |||||| |||||||||| ||||| ||||| ||||| | |||||||| ||| ||| || Sbjct 1321 TTTTCCAGCGAATATCAGGCGCTGCTGGTCAGGAGGGATGCCCTCCTTATCCTGAATCTT 1262 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 ||| || | | | |||| || || |||| |||||||||||||| || Sbjct 1261 GGACTTGACGTTGTCGATGGTGTCGGACGATTCGACTTCCAACGTAATCGTCTTGCCGGT 1202 Query 45313 CAGAGTCTTCACAAAGATTTGCAT 45336 | ||||| || ||||||||||| Sbjct 1201 TAATGTCTTGACGAAGATTTGCAT 1178 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/208 (70%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 45130 CAAG-TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCA 45188 |||| |||| |||| ||| |||||||| ||||||||| ||| ||| | || || | Sbjct 1157 CAAGATGCAACGTGGACTCTTTCTGAATATTGTAGTCGGACAGAGTTCGACCATCCTCGA 1098 Query 45189 GTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAA 45248 | || || || || || |||| |||||||| || || || | |||||||||||| || Sbjct 1097 GCTGCTTACCAGCAAAGATCAGGCGCTGTTGATCCGGGGGAATGCCCTCCTTGTCCTGAA 1038 Query 45249 TTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGC 45308 | ||| ||| || | | | |||| || || |||| || |||||||||| Sbjct 1037 TCTTTGACTTCACATTATCGATGGTGTCGGACGATTCGACTTCCAGAGTGATCGTCTTGC 978 Query 45309 CCGTCAGAGTCTTCACAAAGATTTGCAT 45336 | |||| ||||| || || |||||||| Sbjct 977 CAGTCAACGTCTTGACGAATATTTGCAT 950 Score = 89.7 bits (98), Expect = 4e-13 Identities = 90/116 (78%), Gaps = 1/116 (1%) Strand=Plus/Minus Query 45130 CAAG-TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCA 45188 |||| || ||||| ||| |||||||| ||||||||| ||| | | || |||| Sbjct 929 CAAGATGTAGCGTTGACTCTTTCTGAATATTGTAGTCGGACAGGGTCCTGCCATCCTCCA 870 Query 45189 GTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 ||||||||||| || ||||| || |||||||||||||| | ||||||||||||| Sbjct 869 ACTGTTTTCCGGCAAAGATCAAGCGTTGTTGGTCGGGAGGAATACCCTCCTTGTCC 814 >seq574 Length=30825 Score = 125 bits (138), Expect = 6e-24 Identities = 158/214 (74%), Gaps = 6/214 (3%) Strand=Plus/Plus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCA--GTT-GGCGATCGTCGTCCAG 45189 |||||| |||||||||||||| |||||||||||| ||| ||| ||| ||| ||| || Sbjct 26592 GTGCAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCTCATGGTTCGGCCATCTTCG---AG 26648 Query 45190 TTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAAT 45249 || |||||||| || || | ||||| |||||||| || | |||||||| ||| ||| Sbjct 26649 CTGCTTTCCGGCAAAGATGAGGCGCTGCTGGTCGGGGGGAATGCCCTCCTTATCCTGAAT 26708 Query 45250 TTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCC 45309 || ||| || | | | |||| | ||||||||| | ||| || ||||| || Sbjct 26709 CTTGGACTTGACGTTATCGATGGTGTCAGAAGACTCCACCTCAAGGGTGATTGTCTTCCC 26768 Query 45310 CGTCAGAGTCTTCACAAAGATTTGCATGTTGCCT 45343 ||| || || || || ||||| ||||| |||||| Sbjct 26769 CGTGAGGGTTTTGACGAAGATCTGCATCTTGCCT 26802 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395069513509801