Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cerataphis_20brasiliensis_20yeast- like_20symbiont_20[genbank_20GCA_5F000372705.1_202013-04-22] 1,181 sequences; 25,465,455 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq677 435 3e-117 seq780 147 2e-30 seq598 129 5e-25 seq1010 82.4 7e-11 >seq677 Length=7370 Score = 435 bits (482), Expect = 3e-117 Identities = 1244/1893 (66%), Gaps = 48/1893 (3%) Strand=Plus/Plus Query 22105 CTTGTCCACTGTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACATGCC 22164 || ||| || || ||||| |||| || |||| | || || || || |||||||| Sbjct 4497 CTGGTCTACCGTGAACTGGATGGGCGCCGCCGCCGCCTGCGTACGCAGGTAGTACATGCC 4556 Query 22165 CGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCCATAACTCGG 22224 || || || |||| |||||| | |||||| || || | ||| || ||| Sbjct 4557 GGTTTTGAGCCCCAGCTTCCAGCCAGTAAAATGCATGCTGGTGATTTTGCCCA---TCGA 4613 Query 22225 CAAGTC---CATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGC 22281 | ||| ||||| | |||| |||||| ||| |||||||| || || || ||||| Sbjct 4614 CGGGTCTTTCATGTGGATGTTGAGCGACTGGGACTGGTCGATAAAGGCACCGCGGTCGGC 4673 Query 22282 GGCCATATTTATCAA-TGTACGCATCGACATTTCCCATACGGTCTTGTACAGTTGCCTGA 22340 ||||| | | || ||| ||| ||| || ||||| || |||||||| ||| | ||| Sbjct 4674 CGCCATCTGCACCACCTGT-CGCTGCGAAATCTCCCAGACCGTCTTGTAAAGTGCCTTGA 4732 Query 22341 TCTCTAACGGTATCGATTCGATCCTCTGGACGGACCCGTTATTGTGTATGATCAAATTTT 22400 || || || ||| |||||| ||||||||| | ||||| |||| Sbjct 4733 CGTCAGCAGGGATGTTGGGGATGTTCTGGATGGACCCGTTTTCCGCAATGATTCGGTTTT 4792 Query 22401 TAATCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTCACCA 22460 | |||| || ||| || || | | | || || |||| ||| |||| |||| Sbjct 4793 TCATCGAGTCCGACCATAAGCCCAAGTCAACCAGGTCCTTGAGCAGCCAGGGGTTGACCA 4852 Query 22461 CTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAG 22520 | || |||||||| | || ||||| || |||||||||||||| ||| | || ||||| Sbjct 4853 CCTGGAACTCGCCCGCCAGCACGCGTCGCTGGTAAATGTTGGACGTGTAAGGCTCGAAGC 4912 Query 22521 ATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCG 22580 | || || || || || ||||| | || || |||||||| || || | ||| || Sbjct 4913 ACTCGTTATTGCCGAGGATCTGCGACGTGCTGGCCGTCGGCATGGGGGCTACCAGCAGAC 4972 Query 22581 AGTTTCTCAAGCCGTGCT--TTGAAATTTTACTCTTG-AGCATCGACCAGTCCCACAGAT 22637 ||| | | ||| |||| |||| | | ||| | ||| | ||| ||||| || | Sbjct 4973 TGTTGCGTATGCCATGCTCCTTGA---TCTGCTCCCGTAGCGTTTCCCACTCCCAGAGCT 5029 Query 22638 CGGACGGCGTCACATTGTCCCACATATCGTATTGCAACACGCCG--CGACTCGCCGG-GC 22694 | || ||| |||| || |||||| || | || | |||||| |||| ||||| | Sbjct 5030 CTGAAGGCTTCACCTT---CCACATGTCAAACTGGAGCACGCCCTCCGAC--GCCGGCGA 5084 Query 22695 TGCCTTCGTACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGCTCGCCTC-CAAC 22753 | |||| ||| ||| || || | || ||| || || || | | | | ||| Sbjct 5085 TCCCTTAA-ACGACGAGTAGGGCCCTTCGCTCTTGGCCAGCTC-CATCGAGGCACTCAAG 5142 Query 22754 GCGCCGTAATATATAGTCTCGAAGATTTTCTTGTTCAATTCGGCGGC----GGCGACGCT 22809 ||| ||| || || || |||||||||| || ||| | || ||| || ||| Sbjct 5143 GCGGCGTGGTAGATGGTTTCGAAGATTTGCTGGTTTAGCTCCCGGGCCTCCGGAGAC--- 5199 Query 22810 TTCGTACGGCATACGCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGAT 22869 || ||||||| || | || || || || |||| ||||| || || | ||| || Sbjct 5200 -TCAAACGGCATGCGGAGAGCCAGAAAAGCATCGGCCAGGCCCTGGACACCCACACCAAT 5258 Query 22870 CGGTCGGTTTTTCAGATTCGACACTTTTGC----CTCGGGCAAAGGATACCAATTCGAAT 22925 ||| |||| || || || |||| ||| | || || || | Sbjct 5259 CGGCCGGTGCCGCATGTTG----CTGTTGCGGGCCTCTTCAACTGGGTAATGGTTGACGT 5314 Query 22926 CGATTGTTCTGTTCAAGTTTCTGGTCACAATTTTCGTTATNNNNNNNNNNNNNTCAAAGT 22985 |||| | || || | ||| | | |||| | ||| | | |||| Sbjct 5315 CGATGATCCTATTGAGGTTACGGACGACAACCTGCGTCACCTCGTGGAGCTTCTGGAAGT 5374 Query 22986 CGTAAACGCCCGATTG-TA--CAACAAACTTGTTGACGGCGATCGAGGCAAGATTGCATA 23042 |||| |||| || || | ||||| | ||| | ||||| |||||||| | Sbjct 5375 CGTAGCAGCCCTGTTCATAGTCGACAAAGGCAGGCAGGGCTAGTGAGGCCAGATTGCAGA 5434 Query 23043 CGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTA 23102 |||| || ||||| | || |||||| || ||||| || || || || || | | Sbjct 5435 CGGCGACTTCGTCAGGTGCCGAGTACTCGACGATTTCCGTGCAAAGGTTCGAACTCCGAA 5494 Query 23103 TCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACG 23162 | ||||||| || | || || || || || ||||| |||||||| ||||| | | Sbjct 5495 TGGTGCCCAGGTTCTTTTGATTACTCTTGCGGTTGCAGTGGTCCTTGTACAGCATAAAGG 5554 Query 23163 GCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATAGTCTGAGCGTGAACAC 23222 | ||||||| || ||| | || | ||| | ||| | ||||||| | || | Sbjct 5555 GATTGCCCGTTTCCGTCTGTGCTTCCAGGATAGAATACCAGAGCTTCTGAGCCCGCAC-C 5613 Query 23223 GTCGCACGTAC-CTGCCTTCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCG 23281 ||| || | | ||| || ||||||||||| ||||| || |||||||| ||||| Sbjct 5614 GTCTTGCGGCCACGGCCCTCGCGCTCGTACTTTTCGTACAGAGCCTCAAATTCATCACCG 5673 Query 23282 TAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAGACTCCACATTG-AGTCATT 23340 || ||||||||||||||||| ||| | || |||||||| |||| || | || || Sbjct 5674 TAGCAGTCGGCCAGGCCGGGGCATTCGTTGGGGCACATGAGCGTCCA-ATCGCCGTTTTT 5732 Query 23341 TTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCG 23400 || ||||| |||| || || ||||| ||||| || || ||| || |||||||| || Sbjct 5733 CTCCACGCGCTTCATGAACAGGTCCGGAATCCACAGGGCCAGGAAGAGGTCGCGGGCCCG 5792 Query 23401 CACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCA 23460 |||||||| ||||| |||||| || ||||| ||| || ||||| || || ||||| Sbjct 5793 AACCTCCTCCTTGCCATGGTTCTTGCGCAGATCCAGAAACTCAAACACATCGGCGTGCCA 5852 Query 23461 CGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACG 23520 |||||| | ||| | |||||| || || || | ||| ||||||||||| |||||||| || Sbjct 5853 CGGCTCCAAGTATATGGCAAAGGCACCTGGCCGCTTGTTGCCGCCCTGGTCGACGTAGCG 5912 Query 23521 GGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCC 23580 |||||| |||||| | || | ||||| || | || |||||| || | ||| ||| Sbjct 5913 GGCCGTATTGTTGAAGACACGAAGCATGGGAATGACACCGTTCGAAGTCCCGTTGGTGCC 5972 Query 23581 CGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGA 23640 || | ||||| | || || | || |||| || || ||||| ||| || Sbjct 5973 GGCAATGTAAGAACCGGTAGCACGGATCCGATGCACGTTGAGCCCGATGCCGCCGGCCAT 6032 Query 23641 TTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTT 23700 || || ||||| |||||| || || ||||||||||||||||||||||||||||| || Sbjct 6033 CTTGGAGATCATGGCGCATGTCTTGAGCGTGTCGTAGATGCCCTCGATGCTGTCCTCCTT 6092 Query 23701 GGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGT 23760 | | || | ||| ||||| || | || | ||||| |||| |||||| || Sbjct 6093 CATGTCAACGAGGAAGCACGACGAAAGCTGACACTGAGGCGTGCCGGCGTTGAACAGCGT 6152 Query 23761 CGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCATC 23820 ||| || || || ||| | | ||||| || |||||||| |||| | | || Sbjct 6153 CGGCGACGCATGGGTGAAGAACTTGCTGGACATGAGGTTGTACGTCTCGAGGACTCGGTC 6212 Query 23821 AATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCGAC 23880 || | | || |||||| | ||| |||||||| ||||||| |||||| | ||| || Sbjct 6213 GATATTGCCGCCCCATATACCCACGGCAACGCGCATGATCATGTGTTGAGGGCGCTCAAC 6272 Query 23881 CGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAGTC 23940 | ||||| | |||| || ||| ||||||| || || || || |||||||| | Sbjct 6273 GATCTTGCCGTCGAGCTTGAGCAAATAAGAACGTTCCAGTGTCTTGAAGCCAAAATACTG 6332 Query 23941 ATAGTTAAAGTCACGATCGTGCACTATGGCCGA 23973 ||||||||||| || || | | |||||||| Sbjct 6333 GTAGTTAAAGTCCCGGTCATAGATGATGGCCGA 6365 >seq780 Length=34333 Score = 147 bits (162), Expect = 2e-30 Identities = 287/420 (68%), Gaps = 12/420 (3%) Strand=Plus/Plus Query 57981 GCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATG 58040 || || || || ||||| || || ||||| || |||||| | || || ||| | Sbjct 30502 GCCTTTGCTGCGGTCGAGGGCATCTTCTTCAGTGGTGCCTTTGCCTCCATCTTCTGGCTC 30561 Query 58041 AAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAG 58100 |||||||| ||||| ||||| ||| |||| ||| |||||| | || ||||| || ||| Sbjct 30562 AAGAAACGTGGCCTAATGCCTGGCTTGACCTTTTCCAACGAACTCATTTCGCGAGATGAG 30621 Query 58101 GGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAACCGACGCGG 58160 ||| | || || |||||||| || || | |||| ||| | ||| || | | | | Sbjct 30622 GGTTTGCACACGGATTTTGCCTGTCTCCTACACTCGCACTT---CAAAAACCGGGCCAGC 30678 Query 58161 GATCG---CATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCACC 58217 | | |||| ||||| |||||||| || ||| | |||||| | || ||| ||||| Sbjct 30679 AAACAGGTCATCCATGACATCATCACCGATGCCGTCACCATCGAACAAGAATTTCTCACC 30738 Query 58218 GAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACATTGAG 58277 |||||||| || || | ||||| |||||| |||||| |||| || ||| Sbjct 30739 GAAGCCCTGCCCTGCGCATTACTCGGCATGAACGCCACCTTGATGAAGCAGTATATCGAG 30798 Query 58278 TTTGTTGCCGACAGACTTTTGCTCGAACTG---ATTGGAGAGCGTCATTACAACACGAAA 58334 || ||||||||| | ||| | ||| ||| | | | || || |||| || Sbjct 30799 TTCGTTGCCGACCGCCTTCTAGTCGCCCTGGGCAACGAAAAG-GT--GTACAGGTCGTCG 30855 Query 58335 AATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTTTTTCGAAAAA 58394 || || |||||||| ||| | || ||||| | ||||||||| |||||||| |||||| Sbjct 30856 AACCCCTTTGATTTCATGGAAAACATATCGCTAGGGGGCAAGACCAACTTTTTTGAAAAA 30915 Score = 86.0 bits (94), Expect = 6e-12 Identities = 224/334 (67%), Gaps = 7/334 (2%) Strand=Plus/Plus Query 57570 ATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTG 57629 |||||| | |||||||| |||||||| || || |||||||| | ||| ||| | || || Sbjct 30017 ATTTGGCAAATGTACAAGAAGGCAGAGGCCTCCTTTTGGACAGCCGAGGAAATCGATCTC 30076 Query 57630 TCTAAGGATCTGAGCGATTGGGATTCCCTCAAAGAATC-TGA-GAGAAAT--TTTATTAA 57685 || ||||| || ||| ||| | || | |||| ||| || || | ||| || Sbjct 30077 TCCAAGGACTTGCACGACTGGAACAACCGCCT-GAATGATGACGAAAAGTACTTTGTTTC 30135 Query 57686 ACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAG 57745 ||| | |||| ||||| ||||| || || || || || ||||| || ||||| || | Sbjct 30136 CCACATCCTGGCCTTTTTTGCCGCCTCGGACGGCATCGTCAACGAAAACTTGGTTGAGCG 30195 Query 57746 ATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCAT 57805 || || || || | | ||||| | ||||| ||||||||||| | || Sbjct 30196 GTTCAGCGGCGAGGTTCAGATCCCCGAGGCCCGTTGCTTCTACGGATTTCAGATCATGAT 30255 Query 57806 TGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACAACGA 57865 || ||| | || || || | || || || || |||||||| || | ||||| || | Sbjct 30256 GGAGAACATCCACTCCGAGACATACTCCCTCCTGATCGATACATATATCAAGGAGAATGC 30315 Query 57866 CGAG-AAACGTAGACTGTTCAACGCGATCGAAAC 57898 | || || || || ||||| || || ||||| Sbjct 30316 CCAGCGGACCTA-TCTCTTCAATGCTATTGAAAC 30348 >seq598 Length=71582 Score = 129 bits (142), Expect = 5e-25 Identities = 146/193 (76%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| || || ||||||||||| || || ||||| ||| | || |||||| | || Sbjct 1406 ATGCAAATCTTTGTCAAGACTCTGACGGGAAAGACGATTACCTTGGAAGTTGAATCTTCG 1465 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | || | || || || |||| |||||||||||| | || |||||||| Sbjct 1466 GATACGATTGACAACGTGAAGTCGAAAATACAAGACAAGGAAGGCATTCCTCCCGACCAA 1525 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATAA 31371 ||||| || ||||| ||||| ||||| ||||||| | | | ||| ||||||| ||||| Sbjct 1526 CAGCGCCTCATATTTGCTGGAAAACAACTGGAAGA-TGGACGTACTCTGAGCGACTATAA 1584 Query 31372 CATTCAAAAAGAA 31384 |||||| |||||| Sbjct 1585 CATTCAGAAAGAA 1597 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| ||||| | || ||||| ||||| || | || || ||| ||||| Sbjct 1178 ATGCAAATCTTCGTCAAGACATTAACCGGCAAGACGATTACGTTGGAAGTCGAATCGTCC 1237 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | ||||| | || ||| ||||| ||| | || || |||||| Sbjct 1238 GACACCATCGACAACGTCAAGTCCAAGATTCAGGATAAGGAGGGCATCCCTCCTGACCAG 1297 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||||| || ||||||||||| ||||| | || || ||| | || || ||| Sbjct 1298 CAGCGCCTGATATTCGCTGGAAAACAACTTGAGGATGGCCGGACCCTCTCTGACTACAAC 1357 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || || ||||| || ||| | || || || || | ||| | || |||| Sbjct 1358 ATCCAGAAAGAGTCCACTTTGCACCTCGTCCTGCGTCTGCGTGGAGGTA 1406 >seq1010 Length=27177 Score = 82.4 bits (90), Expect = 7e-11 Identities = 126/180 (70%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 31201 TTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGT 31260 |||||||||||| || || ||||| || |||||| |||| || || |||| |||| | Sbjct 25696 TTTCGTAAAGACCCTAACGGGCAAGACCATCACCCTCGAGGTCGAGTCGTCGGACACGAT 25637 Query 31261 CGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCT 31320 ||| | |||||| | || ||| ||||| ||| | || || || || || || || Sbjct 25636 CGATAATGTCAAATCCAAGATTCAGGATAAGGAGGGCATTCCTCCGGATCAACAACGACT 25577 Query 31321 AATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAAAA 31380 || ||||| ||||| ||| | || ||| || || |||||| ||||| ||||| Sbjct 25576 GATCTTCGCCGGCAAGCAGCTTGAGGACGGCCGAACGCTGTCCGATTACAACATCCAAAA 25517 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445759819373520