Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cerataphis_20brasiliensis_20yeast- like_20symbiont_20[genbank_20GCA_5F000372705.1_202013-04-22] 1,181 sequences; 25,465,455 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq677 165 1e-35 seq780 102 1e-16 >seq677 Length=7370 Score = 165 bits (182), Expect = 1e-35 Identities = 458/700 (65%), Gaps = 22/700 (3%) Strand=Plus/Plus Query 63222 GGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAG 63281 || ||||| | || ||||| | || ||| || |||| | || ||| || ||||| || Sbjct 5692 GGGCATTCGTTGGGGCACATGAGCGTCCAATCGCCGTTTTTCTCCACGCGCTTCATGAAC 5751 Query 63282 AGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTA 63341 || || |||||||| || || | || || || | | | | ||||| || || Sbjct 5752 AGGTCCGGAATCCACAGGGCCAGGAAGAGGTCGCGGGCCCGAACCTCCTCCTTGCCATGG 5811 Query 63342 TTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCC 63401 ||||| ||||| || ||| | | | ||| | |||||||| |||||||||||||| Sbjct 5812 TTCTTGCGCAGATCCAGAAACTCAAACACATCGGCGTGCCACGGCTCCAAGTATATGGCA 5871 Query 63402 ATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACT 63461 | | || ||||| ||||| || ||||| || | ||| | || || || || | || Sbjct 5872 AAGGCACCTGGCCGCTTGTTGCCGCCCTGGTCGACGTAGCGGGCCGTATTGTTGAAGACA 5931 Query 63462 CTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTG 63521 | | ||| ||||| | |||||| || | || ||||| |||| || || || | Sbjct 5932 CGAAGCATGGGAATGACACCGTTCGAAGTCCCGTTGGTGCCGGCAATGTAAGAACCGGTA 5991 Query 63522 GCACGAAT--ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGC 63579 ||||| || | | ||| || || || || || ||||| || ||||| | |||| Sbjct 5992 GCACGGATCCGATGCACGTTG--AGCCCGATGCCGCCGGCCATCTTGGAGATCATGGCGC 6049 Query 63580 ATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAAC 63639 || || | |||||| |||||||| || ||||| || || |||||| || || | Sbjct 6050 ATGTCTTGAGCGTGTCGTAGATGCCCTCGATGCTGTCCTCCTTCATGTCAACGAGGA--- 6106 Query 63640 AGCTAGACATTTGGTGAC---GAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCG 63696 ||| ||| | |||| ||| || || || || || | || || || || || | Sbjct 6107 AGCACGACGAAAGCTGACACTGAGGCGTGCCGGCGTTGAACAGCGTCGGCGACGCATGGG 6166 Query 63697 TAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATAT------CCC 63750 | || | || || | || ||||||||||| | || ||| |||| ||| Sbjct 6167 TGAAGAACTTGCTGGACATGAGGTTGTACGTCTCGAGGACTCGGTCGATATTGCCGCCCC 6226 Query 63751 ATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGT 63810 || || || || || || ||||| | |||||| ||||| | ||||| || ||| Sbjct 6227 AT------ATACCCACGGCAACGCGCATGATCATGTGTTGAGGGCGCTCAACGATCTTGC 6280 Query 63811 TGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAA 63870 || | || | ||| || || ||||| || || || |||||||| | ||| || Sbjct 6281 CGTCGAGCTTGAGCAAATAAGAACGTTCCAGTGTCTTGAAGCCAAAATACTGGTAGTTAA 6340 Query 63871 AGTCTCGTTCGTAAATAATAACCGAATTGAGCTTATCCTT 63910 |||| || || || || || |||| | |||| ||||||| Sbjct 6341 AGTCCCGGTCATAGATGATGGCCGAGTCGAGCCTATCCTT 6380 >seq780 Length=34333 Score = 102 bits (112), Expect = 1e-16 Identities = 222/332 (67%), Gaps = 3/332 (1%) Strand=Plus/Minus Query 33804 GTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATC 33863 ||||| || ||||| ||||||||| | | | | || || | ||| ||||||||| Sbjct 30348 GTTTCAATAGCATTGAAGAGATAGGTCCGCTGGGCATTCTCCTTGATATATGTATCGATC 30289 Query 33864 AAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACAT 33923 | || || | || || || ||||| || || ||||||||||||||||| || Sbjct 30288 AGGAGGGAGTATGTCTCGGAGTGGATGTTCTCCATCATGATCTGAAATCCGTAGAAGCAA 30229 Query 33924 CTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATT 33983 | ||||||| ||||| || || | || || || | || ||||| || || || Sbjct 30228 CGGGCCTCGGGGATCTGAACCTCGCCGCTGAACCGCTCAACCAAGTTTTCGTTGACGATG 30169 Query 33984 CCATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT 34043 || || ||| |||||||| |||| | || | ||| || |||||||| | Sbjct 30168 CCGTCCGAGGCGGCAAAAAAGGCCAGGATGTGGGAAACAAAGTACTTTTCGTCATCATTC 30109 Query 34044 A---GTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAAT 34100 | | || ||||| || | | || || || | ||| | ||| || |||||||||| Sbjct 30108 AGGCGGTTGTTCCAGTCGTGCAAGTCCTTGGAGAGATCGATTTCCTCGGCTGTCCAAAAG 30049 Query 34101 GATGCCTCTGCCTTTTTATACATATTCCAGAT 34132 || ||||||||||| || ||||| | ||| || Sbjct 30048 GAGGCCTCTGCCTTCTTGTACATTTGCCAAAT 30017 Score = 93.3 bits (102), Expect = 5e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 33581 ACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAG 33640 ||| || ||||| ||||| |||||| |||| ||| | |||||| ||||| || | Sbjct 30645 ACAGGCAAAATCCGTGTGCAAACCCTCATCTCGCGAAATGAGTTCGTTGGAAAAGGTCAA 30586 Query 33641 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAA 33700 || |||||||||||||| || || ||||| || ||||| || || | || ||||| Sbjct 30585 GCCAGGCATTAGGCCACGTTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCACTGAAGAA 30526 Query 33701 GATTCCTTCTACTGCAGCAAAGGC 33724 ||| || || || ||||||||||| Sbjct 30525 GATGCCCTCGACCGCAGCAAAGGC 30502 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629808302317680