Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cerataphis_20brasiliensis_20yeast- like_20symbiont_20[genbank_20GCA_5F000372705.1_202013-04-22] 1,181 sequences; 25,465,455 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq677 170 3e-37 seq780 107 3e-18 >seq677 Length=7370 Score = 170 bits (188), Expect = 3e-37 Identities = 461/703 (66%), Gaps = 22/703 (3%) Strand=Plus/Plus Query 79891 CCAGGACATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATA 79950 || || ||||||| || ||||| | || ||| || || | | || || || ||||| Sbjct 5689 CCGGGGCATTCGTTGGGGCACATGAGCGTCCAATCGCCGTTTTTCTCCACGCGCTTCATG 5748 Query 79951 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCT 80010 || || || |||||||| || || | || || || | || | | |||||| || || Sbjct 5749 AACAGGTCCGGAATCCACAGGGCCAGGAAGAGGTCGCGGGCCCGAACCTCCTCCTTGCCA 5808 Query 80011 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 80070 ||||| ||||| || ||| | | | ||| | |||||||| |||||||||||| Sbjct 5809 TGGTTCTTGCGCAGATCCAGAAACTCAAACACATCGGCGTGCCACGGCTCCAAGTATATG 5868 Query 80071 GCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 80130 || | | || || || ||||| || ||||| || | ||| | || || || || | Sbjct 5869 GCAAAGGCACCTGGCCGCTTGTTGCCGCCCTGGTCGACGTAGCGGGCCGTATTGTTGAAG 5928 Query 80131 ACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCA 80190 || | | ||| ||||| | ||| || || || || ||||| |||| || || || Sbjct 5929 ACACGAAGCATGGGAATGACACCGTTCGAAGTCCCGTTGGTGCCGGCAATGTAAGAACCG 5988 Query 80191 CTGGCACGAAT--ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATG 80248 | ||||| || | | ||| || || || || || ||||| || ||||| | | Sbjct 5989 GTAGCACGGATCCGATGCACGTTG--AGCCCGATGCCGCCGGCCATCTTGGAGATCATGG 6046 Query 80249 CGCATCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAA 80308 ||||| || | ||| || ||||||||||| ||||| || || |||||| || || | Sbjct 6047 CGCATGTCTTGAGCGTGTCGTAGATGCCCTCGATGCTGTCCTCCTTCATGTCAACGAGGA 6106 Query 80309 AACAGCTAGACATTTGGTGAC---GACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGT 80365 ||| ||| | |||| || || || || || || | || || || || | Sbjct 6107 ---AGCACGACGAAAGCTGACACTGAGGCGTGCCGGCGTTGAACAGCGTCGGCGACGCAT 6163 Query 80366 GCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATAT------ 80419 | || || | || |||| || ||||||||||| | || || |||| Sbjct 6164 GGGTGAAGAACTTGCTGGACATGAGGTTGTACGTCTCGAGGACTCGGTCGATATTGCCGC 6223 Query 80420 CCCATTGATGAATTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCT 80479 ||||| || || || || || ||||| | |||||| ||||| | |||||||||| Sbjct 6224 CCCAT------ATACCCACGGCAACGCGCATGATCATGTGTTGAGGGCGCTCAACGATCT 6277 Query 80480 TGTTATTTATTTTCAACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATG 80539 || | | || | ||| ||||| ||||| || || || |||||||| | ||| Sbjct 6278 TGCCGTCGAGCTTGAGCAAATAAGAACGTTCCAGTGTCTTGAAGCCAAAATACTGGTAGT 6337 Query 80540 AAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTT 80582 |||||| || || || || || |||||| ||| ||||||| Sbjct 6338 TAAAGTCCCGGTCATAGATGATGGCCGAGTCGAGCCTATCCTT 6380 >seq780 Length=34333 Score = 107 bits (118), Expect = 3e-18 Identities = 112/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 49959 ACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAG 50018 ||| || ||||| ||||| |||||| |||| ||| |||||||||||||| || | Sbjct 30645 ACAGGCAAAATCCGTGTGCAAACCCTCATCTCGCGAAATGAGTTCGTTGGAAAAGGTCAA 30586 Query 50019 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAA 50078 || |||||||||||||| || || ||||| || ||||| ||||| | ||| ||||| Sbjct 30585 GCCAGGCATTAGGCCACGTTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCACTGAAGAA 30526 Query 50079 GATTCCTTCTACTGCGGCAAAGGCAAC 50105 ||| || || || || |||||||| || Sbjct 30525 GATGCCCTCGACCGCAGCAAAGGCTAC 30499 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718258196556840