Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cerataphis_20brasiliensis_20yeast- like_20symbiont_20[genbank_20GCA_5F000372705.1_202013-04-22] 1,181 sequences; 25,465,455 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq598 113 5e-20 seq780 111 2e-19 >seq598 Length=71582 Score = 113 bits (124), Expect = 5e-20 Identities = 164/230 (71%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || ||||| | || | ||| | || || ||||| || || ||||| ||| | Sbjct 1176 CCGCCGCGCAAACGAAGGACAAGATGCAACGTGGACTCTTTCTGAATATTGTAGTCGGAC 1117 Query 143018 ATTGTGCTCGAG--TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 143075 | || |||| || ||||| || ||||||||| ||||||| || || ||||| || | Sbjct 1116 AGAGT--TCGACCATCCTCGAGCTGCTTACCAGCAAAGATCAGGCGCTGTTGATCCGGGG 1059 Query 143076 GTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTA 143135 | ||||| || ||||| ||| ||| || | | || | ||||| | | ||| | Sbjct 1058 GAATGCCCTCCTTGTCCTGAATCTTTGACTTCACATTATCGATGGTGTCGGACGATTCGA 999 Query 143136 CTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 |||| | ||| | ||||||||| ||||| || || ||||||||||||||| Sbjct 998 CTTCCAGAGTGATCGTCTTGCCAGTCAACGTCTTGACGAATATTTGCATA 949 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||| || | ||||| || | || | || || ||||| || |||||||| || Sbjct 1404 CCTCCACGCAGACGCAGGACGAGGTGCAAAGTGGACTCTTTCTGGATGTTGTAGTCAGAG 1345 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || | || || |||||||| ||||| | ||||| || ||||| || ||||| Sbjct 1344 AGGGTCCGGCCATCCTCAAGTTGTTTTCCAGCGAATATCAGGCGCTGCTGGTCAGGAGGG 1285 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 ||||| || || || ||| || || | | || | ||||| | | ||| ||| Sbjct 1284 ATGCCCTCCTTATCCTGAATCTTGGACTTGACGTTGTCGATGGTGTCGGACGATTCGACT 1225 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | || | |||||||||||| ||||| || ||||| ||||||||| Sbjct 1224 TCCAACGTAATCGTCTTGCCGGTTAATGTCTTGACGAAGATTTGCATA 1177 >seq780 Length=34333 Score = 111 bits (122), Expect = 2e-19 Identities = 251/370 (68%), Gaps = 17/370 (5%) Strand=Plus/Plus Query 50494 GGCATAATGCCCGGCCTCACGTTTAGCAACGAGTTGATTTCGCGCGACGAAGGAATGCAC 50553 ||| ||||||| ||| | || ||| |||||| | |||||||| || || || ||||| Sbjct 30571 GGCCTAATGCCTGGCTTGACCTTTTCCAACGAACTCATTTCGCGAGATGAGGGTTTGCAC 30630 Query 50554 ACAGACTTTGCGTGTTTGTACTACAATACGCGCGTAAATGAAAAATTATCATACGAAACA 50613 || || ||||| ||| | ||||| | || | | ||||| | ||||| Sbjct 30631 ACGGATTTTGCCTGTCTC--CTACACT-----CGCACTTCAAAAACCGGGCCAGCAAACA 30683 Query 50614 ----ATTTTGGACATGTTCAAAGAAGCCGTCGACATCGAAAAAGAGTTTTTCACGGACGC 50669 || ||||| ||| || |||||| ||||||| |||| ||| |||| || || Sbjct 30684 GGTCATCCATGACATCATCACCGATGCCGTCACCATCGAACAAGAATTTCTCACCGAAGC 30743 Query 50670 TTTACCCGTGGCATTGTTGGGCATGAACGCAGACATGATGTGCGAGTACATTGAGTTTGT 50729 | ||| ||||| | ||||||||||| | ||||| |||| || ||||| || Sbjct 30744 CCTGCCCTGCGCATTACTCGGCATGAACGCCACCTTGATGAAGCAGTATATCGAGTTCGT 30803 Query 50730 TGCAGACAG-ATTGTTGTTGCAGCTGGGACAACCGAAATACTATAATGCACGT--AACCC 50786 ||| ||| | || | || || ||||| ||| ||||| | || | ||| ||||| Sbjct 30804 TGCCGACCGCCTTCTAGTCGC-CCTGGG-CAA-CGAAAAGGTGTACAGGTCGTCGAACCC 30860 Query 50787 CTTTCCGTTTATGAATAACATATCGTTGGAGGGCAAAACAAACTTTTTCGAAAGACGTGT 50846 |||| || ||| | ||||||||| | | |||||| || |||||||| |||| ||| || Sbjct 30861 CTTTGATTTCATGGAAAACATATCGCTAGGGGGCAAGACCAACTTTTTTGAAAAACGGGT 30920 Query 50847 AGGCGAATAC 50856 || || ||| Sbjct 30921 CGGTGACTAC 30930 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 507006915199920