Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cerataphis_20brasiliensis_20yeast- like_20symbiont_20[genbank_20GCA_5F000372705.1_202013-04-22] 1,181 sequences; 25,465,455 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq677 156 6e-33 seq780 138 2e-27 >seq677 Length=7370 Score = 156 bits (172), Expect = 6e-33 Identities = 328/484 (68%), Gaps = 4/484 (1%) Strand=Plus/Minus Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935 ||||||||||| || |||||||| || | ||| | |||||||| || |||||||| || Sbjct 5900 CAGGGCGGCAACAAGCGGCCAGGTGCCTTTGCCATATACTTGGAGCCGTGGCACGCCGAT 5841 Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995 || ||||| ||| | || ||||||| ||| |||| || |||| || ||| | ||| Sbjct 5840 GTGTTTGAGTTTCTGGATCTGCGCAAGAACCATGGCAAGGAGGAGGTTCGGGCCCGCGAC 5781 Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCTAC 97055 | || || || ||| | || || |||||||||||||||| | | ||| | Sbjct 5780 CTCTTCCTGGCCCTGTGGATTCCGGACCTGTTCATGAAGCGCGTGGAGAAAAACGGCGAT 5721 Query 97056 TGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTT 97115 |||| || ||||||||| || | ||||| ||| |||| |||| || || || ||| Sbjct 5720 TGGACGCTCATGTGCCCCAACGAATGCCCCGGCCTGGCCGACTGCTACGGTGATGAATTT 5661 Query 97116 GAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCG-ATACGTGAGACGAGTCGATGCACG 97174 ||||| |||| ||||||| |||||||| || ||||| || || | Sbjct 5660 GAGGCTCTGTACGAAAAGTACGAGCGCGAGGGCCGTGGCCGCAAGACG-GTGCGGGCTC- 5603 Query 97175 AGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCT 97233 |||| || ||| | | ||| || || ||| || || || | ||| | || || | Sbjct 5602 AGAAGCTCTGGTATTCTATCCTGGAAGCACAGACGGAAACGGGCAATCCCTTTATGCTGT 5543 Query 97234 ACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCCA 97293 ||||||| | || ||||| || || ||| || |||||||||| | | || | Sbjct 5542 ACAAGGACCACTGCAACCGCAAGAGTAATCAAAAGAACCTGGGCACCATTCGGAGTTCGA 5483 Query 97294 ATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGTTTGCGTTCTGG 97353 | || ||||||||||| || |||||| | | || ||||| || || ||| ||||| Sbjct 5482 ACCTTTGCACGGAAATCGTCGAGTACTCGGCACCTGACGAAGTCGCCGTCTGCAATCTGG 5423 Query 97354 CATC 97357 | || Sbjct 5422 CCTC 5419 >seq780 Length=34333 Score = 138 bits (152), Expect = 2e-27 Identities = 195/270 (72%), Gaps = 8/270 (3%) Strand=Plus/Plus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 |||||| |||||||||| ||||| |||||||||||||||| | ||| || ||||||| Sbjct 30017 ATTTGGCAAATGTACAAGAAGGCAGAGGCCTCCTTTTGGACAGCCGAGGAAATCGATCTC 30076 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAG---TTTATA 125135 ||||||||| || |||| ||| | | || ||| ||| ||| | || ||| | Sbjct 30077 TCCAAGGACTTGCACGACTGGAACAACCGCCTGAATGA---TGACGAAAAGTACTTTGTT 30133 Query 125136 TCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAA-TCTGTTGAC 125194 || ||||| ||||||| ||||||| ||| || || ||||||||||| || | ||||| Sbjct 30134 TCCCACATCCTGGCCTTTTTTGCCGCCTCGGACGGCATCGTCAACGAAAACTTGGTTGA- 30192 Query 125195 ACGATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCAT 125254 || ||| ||| | || || |||| ||||| |||||||| || ||||| Sbjct 30193 GCGGTTCAGCGGCGAGGTTCAGATCCCCGAGGCCCGTTGCTTCTACGGATTTCAGATCAT 30252 Query 125255 GATTGAGAACGTGCACTCGGAAATGTACTC 125284 ||| |||||| | ||||| || | ||||| Sbjct 30253 GATGGAGAACATCCACTCCGAGACATACTC 30282 Score = 132 bits (146), Expect = 7e-26 Identities = 345/517 (67%), Gaps = 23/517 (4%) Strand=Plus/Plus Query 125361 ATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCC 125420 || || ||||| || | |||| ||||| |||||| | ||| | || || |||| || Sbjct 30430 ATTCGCAAAAAAGCCGACTGGGCTATTCGCTGGATCCAGGACAAAAACTCGTCGTTTGCT 30489 Query 125421 GACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCC 125480 | | |||| || || || || || |||||||||||||| ||| ||||| || Sbjct 30490 CAACGCTTGGTAGCCTTTGCTGCGGTCGAGGGCATCTTCTTCAGTGGTGCCTTTGCCTCC 30549 Query 125481 ATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATA 125540 ||||| ||||||||||| || || || ||||| || |||| ||||| | || Sbjct 30550 ATCTTCTGGCTCAAGAAACGTGGCCTAATGCCTGGCTTGACCTTTTCCAACGAACTCATT 30609 Query 125541 TCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTGCGT 125600 || ||||| ||||| | ||| || ||||| |||| || | || || || Sbjct 30610 TCGCGAGATGAGGGTTTGCACACGGATTTTGC-------CTGTCTC-CTACACTC-GCAC 30660 Query 125601 CCCGAGTGCAGATCCAGCGATGAAAAGGTCATC---AACATTGTAACCGATGCCGTGAGG 125657 | | | | ||||| || |||||||| |||| | ||||||||||| | Sbjct 30661 TTCAAAAACCGGGCCAGC---AAACAGGTCATCCATGACATCATCACCGATGCCGTCACC 30717 Query 125658 ATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGA-TTGGCATGAACTGCAA 125716 || |||||||| ||||| |||||| |||| || | |||| | | ||||||||| || Sbjct 30718 ATCGAACAAGAATTTCTCACCGAAGCCCTGCC-CTGCGCATTACTCGGCATGAACGCCAC 30776 Query 125717 GCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGGC-- 125774 | ||| |||| || ||||| || || || || || || || || ||| Sbjct 30777 CTTGATGAAGCAGTATATCGAGTTCGTTGCCGACCGCCTTCTAGTCGCCCTG---GGCAA 30833 Query 125775 CG-CAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGG 125833 || ||| | |||| | ||| ||||||||||||||| | |||||| |||| ||| Sbjct 30834 CGAAAAGGTGTACAGGTCGTCGAACCCCTTTGATTTCATGGAAAACATATCGCTAGGGGG 30893 Query 125834 TAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTAC 125870 |||||||||||||| || || |||| | || ||| Sbjct 30894 CAAGACCAACTTTTTTGAAAAACGGGTCGGTGACTAC 30930 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741048260113560