Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cerataphis_20brasiliensis_20yeast- like_20symbiont_20[genbank_20GCA_5F000372705.1_202013-04-22] 1,181 sequences; 25,465,455 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq598 150 4e-31 seq574 100 7e-16 seq1010 89.7 1e-12 >seq598 Length=71582 Score = 150 bits (166), Expect = 4e-31 Identities = 161/213 (76%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || ||||| || || || |||||||||||||| ||||| || ||||||| ||| || Sbjct 1162 AAGGACAAGATGCAACGTGGACTCTTTCTGAATATTGTAGTCGGACAGAGTTCGACCATC 1103 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 || || || || |||||||| || || | ||||||||| || || || || || || || Sbjct 1102 CTCGAGCTGCTTACCAGCAAAGATCAGGCGCTGTTGATCCGGGGGAATGCCCTCCTTGTC 1043 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 ||||||||||| || ||||| || | ||| ||| | ||| || || || || || || Sbjct 1042 CTGAATCTTTGACTTCACATTATCGATGGTGTCGGACGATTCGACTTCCAGAGTGATCGT 983 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||| ||||| | || || || ||||| ||||| Sbjct 982 CTTGCCAGTCAACGTCTTGACGAATATTTGCAT 950 Score = 125 bits (138), Expect = 2e-23 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || || || || || || |||||||| || || |||||||| || || | || || Sbjct 1389 AGGACGAGGTGCAAAGTGGACTCTTTCTGGATGTTGTAGTCAGAGAGGGTCCGGCCATCC 1330 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || |||||||||||||| || || || | ||| || |||||||| || || || |||||| Sbjct 1329 TCAAGTTGTTTTCCAGCGAATATCAGGCGCTGCTGGTCAGGAGGGATGCCCTCCTTATCC 1270 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 |||||||| | || || || || | ||| ||| | ||| || || | ||||| ||| Sbjct 1269 TGAATCTTGGACTTGACGTTGTCGATGGTGTCGGACGATTCGACTTCCAACGTAATCGTC 1210 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || | ||| || || || || ||||| Sbjct 1209 TTGCCGGTTAATGTCTTGACGAAGATTTGCAT 1178 Score = 122 bits (134), Expect = 2e-22 Identities = 142/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 104368 TTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAA 104427 |||||||||||| |||||||| ||||| | || ||||| ||||||||||||||||| Sbjct 1597 TTCTTTCTGAATGTTATAGTCGCTCAGAGTACGTCCATCTTCCAGTTGTTTTCCAGCAAA 1538 Query 104428 AATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATT 104487 || || | |||||| || ||||| || ||||| || || || || || | || || || Sbjct 1537 TATGAGGCGCTGTTGGTCGGGAGGAATGCCTTCCTTGTCTTGTATTTTCGACTTCACGTT 1478 Query 104488 TTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTAC 104547 || | ||||| || ||| || || | ||||| ||||| || || || || || || Sbjct 1477 GTCAATCGTATCCGAAGATTCAACTTCCAAGGTAATCGTCTTTCCCGTCAGAGTCTTGAC 1418 Query 104548 AAATATCTGCAT 104559 ||| || ||||| Sbjct 1417 AAAGATTTGCAT 1406 Score = 113 bits (124), Expect = 1e-19 Identities = 142/195 (73%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || ||||||| || || |||||||||||||| ||||| || || || || || || Sbjct 934 AAGGACAAGATGTAGCGTTGACTCTTTCTGAATATTGTAGTCGGACAGGGTCCTGCCATC 875 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 || | |||||||| ||||| || | | ||||| || ||||| || || || || || Sbjct 874 CTCCAACTGTTTTCCGGCAAAGATCAAGCGTTGTTGGTCGGGAGGAATACCCTCCTTGTC 815 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 ||| ||||| | || ||||| || | ||||| | |||||||| || || || || Sbjct 814 CTGGATCTTGGACTTGACATTATCGATAGTATCAGACGACTCTACCTCAAGAGTGATCGT 755 Query 104527 CTTACCAGTAAGTGT 104541 ||| ||||| | ||| Sbjct 754 CTTGCCAGTGACTGT 740 >seq574 Length=30825 Score = 100 bits (110), Expect = 7e-16 Identities = 139/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 104369 TCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAA 104428 || ||||| || || ||||| | |||| || ||||| || || ||||| ||||| Sbjct 26605 TCCTTCTGGATGTTGTAGTCGCTCATGGTTCGGCCATCTTCGAGCTGCTTTCCGGCAAAG 26664 Query 104429 ATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTT 104488 || || | ||| || || || || || || || |||||||||||||| | || || || Sbjct 26665 ATGAGGCGCTGCTGGTCGGGGGGAATGCCCTCCTTATCCTGAATCTTGGACTTGACGTTA 26724 Query 104489 TCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACA 104548 || | ||| || || || ||||| || || || ||||| || || || ||||| || Sbjct 26725 TCGATGGTGTCAGAAGACTCCACCTCAAGGGTGATTGTCTTCCCCGTGAGGGTTTTGACG 26784 Query 104549 AATATCTGCATTTTG 104563 || |||||||| ||| Sbjct 26785 AAGATCTGCATCTTG 26799 >seq1010 Length=27177 Score = 89.7 bits (98), Expect = 1e-12 Identities = 127/179 (71%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 104372 TTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATT 104431 || || || || || || || || |||| ||||| || || || || || || || || Sbjct 25517 TTTTGGATGTTGTAATCGGACAGCGTTCGGCCGTCCTCAAGCTGCTTGCCGGCGAAGATC 25576 Query 104432 AGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCT 104491 || | |||||||| ||||| || || || |||||||||||||| | ||| ||||| || Sbjct 25577 AGTCGTTGTTGATCCGGAGGAATGCCCTCCTTATCCTGAATCTTGGATTTGACATTATCG 25636 Query 104492 ACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAA 104550 | || || | || ||||| || || || ||||| || || || || ||||| || Sbjct 25637 ATCGTGTCCGACGACTCGACCTCGAGGGTGATGGTCTTGCCCGTTAGGGTCTTTACGAA 25695 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151380977543148