Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cerataphis_20brasiliensis_20yeast- like_20symbiont_20[genbank_20GCA_5F000372705.1_202013-04-22] 1,181 sequences; 25,465,455 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq1050 167 4e-37 seq25 132 8e-27 seq1080 87.8 3e-13 >seq1050 Length=13000 Score = 167 bits (184), Expect = 4e-37 Identities = 197/267 (74%), Gaps = 0/267 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||||||||| | | || || ||||| |||||||| ||||||||||| || ||| Sbjct 12504 GCGAAGCGTCATCGTAAAGTACTCCGTGATAATATCCAAGGTATCACCAAGCCCGCCATC 12445 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 ||||| | |||||||| || || ||||| ||| | || || || | |||||||| | Sbjct 12444 CGTCGGTTAGCTCGTCGCGGCGGTGTCAAACGTATTTCCGGCCTGATTTATGAAGAAACC 12385 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | || |||||| | ||||| | | ||| |||| ||| || || ||| ||||| Sbjct 12384 CGCGGCGTGTTGAAGGTGTTCCTGGAAAACGTGATCCGTGACGCCGTCACCTACACCGAA 12325 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || | ||||| || ||| ||||||| | ||||| || ||||||||||||| Sbjct 12324 CACGCCAAGAGGAAGACCGTTACCGCCATGGACGTTGTCTACGCGCTGAAACGTCAAGGA 12265 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||| | || ||||| || ||||| Sbjct 12264 CGTACTTTGTACGGTTTCGGCGGTTAA 12238 >seq25 Length=8399 Score = 132 bits (146), Expect = 8e-27 Identities = 144/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || |||||||||||||| |||||||| || ||||||||||| |||||||||| || Sbjct 8203 CTCCGTGATAACATCCAAGGTATCACCAAACCCGCTATCCGTCGGTTGGCTCGTCGCGGC 8262 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || ||||| ||| | || || || |||| ||||| | || | || |||||| | ||| Sbjct 8263 GGTGTCAAACGTATTTCCGGTCTGATCTACGAAGAAACCCGCGGCGTATTGAAGGTGTTC 8322 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || | | ||| |||| ||| || || ||| ||||| ||||| || | ||||| || Sbjct 8323 CTGGAAAACGTGATCCGTGACGCCGTCACCTACACCGAACACGCCAAGAGGAAGACCGTT 8382 Query 16634 ACCTCCATGGA 16644 ||| ||||||| Sbjct 8383 ACCGCCATGGA 8393 >seq1080 Length=67333 Score = 87.8 bits (96), Expect = 3e-13 Identities = 82/102 (80%), Gaps = 2/102 (2%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGC-AGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||||||| |||| ||| || || ||||| || || || || ||||| || | Sbjct 53305 CGCCAAGCGTCATCGCAAGAT-TCTCCGCGACAACATTCAGGGCATTACAAAGCCTGCCA 53247 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTG 16532 |||| ||||| ||||| | ||||| ||||||||| |||||| Sbjct 53246 TCCGGCGTCTTGCTCGCAGGGGTGGTGTCAAGCGTATCTCTG 53205 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79074120203433