Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cerataphis_20brasiliensis_20yeast- like_20symbiont_20[genbank_20GCA_5F000372705.1_202013-04-22] 1,181 sequences; 25,465,455 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq677 174 2e-38 seq780 111 2e-19 >seq677 Length=7370 Score = 174 bits (192), Expect = 2e-38 Identities = 462/703 (66%), Gaps = 22/703 (3%) Strand=Plus/Plus Query 63168 CCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATA 63227 || || ||||| | || ||||| | || ||| || |||| | || ||| || ||||| Sbjct 5689 CCGGGGCATTCGTTGGGGCACATGAGCGTCCAATCGCCGTTTTTCTCCACGCGCTTCATG 5748 Query 63228 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCT 63287 || || || |||||||| || || | || || || | || | | ||||| || || Sbjct 5749 AACAGGTCCGGAATCCACAGGGCCAGGAAGAGGTCGCGGGCCCGAACCTCCTCCTTGCCA 5808 Query 63288 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 63347 ||||| ||||| || ||| | | | ||| | |||||||| |||||||||||| Sbjct 5809 TGGTTCTTGCGCAGATCCAGAAACTCAAACACATCGGCGTGCCACGGCTCCAAGTATATG 5868 Query 63348 GCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 63407 || | | || ||||| ||||| || ||||| || | ||| | || || || || | Sbjct 5869 GCAAAGGCACCTGGCCGCTTGTTGCCGCCCTGGTCGACGTAGCGGGCCGTATTGTTGAAG 5928 Query 63408 ACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCA 63467 || | | ||| ||||| | |||||| || | || ||||| |||| || || || Sbjct 5929 ACACGAAGCATGGGAATGACACCGTTCGAAGTCCCGTTGGTGCCGGCAATGTAAGAACCG 5988 Query 63468 CTGGCACGAAT--ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATG 63525 | ||||| || | | ||| || || || || || ||||| || ||||| | | Sbjct 5989 GTAGCACGGATCCGATGCACGTTG--AGCCCGATGCCGCCGGCCATCTTGGAGATCATGG 6046 Query 63526 CGCATCGTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAA 63585 ||||| || | |||||| ||||| ||||| ||||| || || |||||| || || | Sbjct 6047 CGCATGTCTTGAGCGTGTCGTAGATGCCCTCGATGCTGTCCTCCTTCATGTCAACGAGGA 6106 Query 63586 AACAGCTAGACATTTGGTGAC---GACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGT 63642 ||| ||| | |||| || || || || || || | || || || || | Sbjct 6107 ---AGCACGACGAAAGCTGACACTGAGGCGTGCCGGCGTTGAACAGCGTCGGCGACGCAT 6163 Query 63643 GCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATAT------ 63696 | || || | || || | || ||||||||||| | || ||| |||| Sbjct 6164 GGGTGAAGAACTTGCTGGACATGAGGTTGTACGTCTCGAGGACTCGGTCGATATTGCCGC 6223 Query 63697 CCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCT 63756 ||||| || || || || || ||||| | |||||| ||||| | |||||||||| Sbjct 6224 CCCAT------ATACCCACGGCAACGCGCATGATCATGTGTTGAGGGCGCTCAACGATCT 6277 Query 63757 TGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATG 63816 || || | || | ||| || || ||||| || || || |||||||| | ||| Sbjct 6278 TGCCGTCGAGCTTGAGCAAATAAGAACGTTCCAGTGTCTTGAAGCCAAAATACTGGTAGT 6337 Query 63817 AAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTT 63859 |||||| || || || || || |||||| ||| ||||||| Sbjct 6338 TAAAGTCCCGGTCATAGATGATGGCCGAGTCGAGCCTATCCTT 6380 >seq780 Length=34333 Score = 111 bits (122), Expect = 2e-19 Identities = 224/332 (67%), Gaps = 3/332 (1%) Strand=Plus/Minus Query 33526 GTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATC 33585 ||||| || ||||| ||||||||| | | | | || || | ||| ||||||||| Sbjct 30348 GTTTCAATAGCATTGAAGAGATAGGTCCGCTGGGCATTCTCCTTGATATATGTATCGATC 30289 Query 33586 AAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACAT 33645 | || || | || || || ||||| || || ||||||||||||||||| || Sbjct 30288 AGGAGGGAGTATGTCTCGGAGTGGATGTTCTCCATCATGATCTGAAATCCGTAGAAGCAA 30229 Query 33646 CTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATT 33705 | ||||||| ||||| || || | || || || |||| ||||| || || || Sbjct 30228 CGGGCCTCGGGGATCTGAACCTCGCCGCTGAACCGCTCAACCAAGTTTTCGTTGACGATG 30169 Query 33706 CCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT 33765 ||||| ||| |||||||| |||| | || | ||| || |||||||| | Sbjct 30168 CCGTCCGAGGCGGCAAAAAAGGCCAGGATGTGGGAAACAAAGTACTTTTCGTCATCATTC 30109 Query 33766 A---GTTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAAT 33822 | | || ||||| || | | || || || | ||| | ||| || |||||||||| Sbjct 30108 AGGCGGTTGTTCCAGTCGTGCAAGTCCTTGGAGAGATCGATTTCCTCGGCTGTCCAAAAG 30049 Query 33823 GATGCCTCTGCCTTTTTATACATGTTCCAGAT 33854 || ||||||||||| || ||||| | ||| || Sbjct 30048 GAGGCCTCTGCCTTCTTGTACATTTGCCAAAT 30017 Score = 107 bits (118), Expect = 2e-18 Identities = 110/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 33303 ACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAG 33362 ||| || ||||| ||||| |||||| |||| ||| |||||||||||||| || | Sbjct 30645 ACAGGCAAAATCCGTGTGCAAACCCTCATCTCGCGAAATGAGTTCGTTGGAAAAGGTCAA 30586 Query 33363 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAA 33422 || |||||||||||||| || || ||||| || ||||| || || | ||| ||||| Sbjct 30585 GCCAGGCATTAGGCCACGTTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCACTGAAGAA 30526 Query 33423 GATTCCTTCTACTGCAGCAAAGGC 33446 ||| || || || ||||||||||| Sbjct 30525 GATGCCCTCGACCGCAGCAAAGGC 30502 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622938003741960