Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cerataphis_20brasiliensis_20yeast- like_20symbiont_20[genbank_20GCA_5F000372705.1_202013-04-22] 1,181 sequences; 25,465,455 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq598 102 5e-17 >seq598 Length=71582 Score = 102 bits (112), Expect = 5e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||| || | |||||| | || | ||| | ||| ||| || ||||||||||| || | Sbjct 1178 TACCGCCGCGCAAACGAAGGACAAGATGCAACGTGGACTCTTTCTGAATATTGTAGTCGG 1119 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 ||| | || | || || | || || || ||||| || ||||| |||||||| | || Sbjct 1118 ACAGAGTTCGACCATCCTCGAGCTGCTTACCAGCAAAGATCAGGCGCTGTTGATCCGGGG 1059 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | ||| || |||||| ||| ||| ||||||||| | || || || ||| | Sbjct 1058 GAATGCCCTCCTTGTCCTGAATCTTTGACTTCACATTATCGATGGTGTCGGACGATTCGA 999 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||| | || || || || || ||||| || || |||||||| ||||| Sbjct 998 CTTCCAGAGTGATCGTCTTGCCAGTCAACGTCTTGACGAATATTTGCAT 950 Score = 91.5 bits (100), Expect = 1e-13 Identities = 196/293 (67%), Gaps = 0/293 (0%) Strand=Plus/Plus Query 6195 GACGCGTTCTACCGCTACAAAATGCCGCGCATCTGCGCCAAGGTCGAGGGTAAGGGAAAC 6254 |||| || ||||||||||| ||| ||| || ||||| ||||||| ||||||||| Sbjct 20772 GACGTCTTTTACCGCTACAAGATGGAGCGTCTCCAGACCAAGATCGAGGGCAAGGGAAAC 20831 Query 6255 GGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCGCTAAGGCGCTCGGACGCCCTGCC 6314 || || || || ||| | ||||| ||||| |||||| |||||| ||||| | Sbjct 20832 GGCATCAAGACAGTCGTCGTCAATTTGCCTAGTGTCGCTGCTTCGCTCGCTCGCCCGCCT 20891 Query 6315 ACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAA 6374 | || | || || ||||| | ||| | ||||| |||| | ||||| ||| Sbjct 20892 TCGTATATCAACAAGTACTTCGGCTTTGAATTGGGCGCCATGACGAACAATGATCCCAAG 20951 Query 6375 AACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGAC 6434 | || || | ||| | || || | ||| | |||||||| || ||||| || || Sbjct 20952 GATGATCGTTGGATCATCAATGGTGCTCATGAATCTGCCAAACTACAGGATCATCTCGAT 21011 Query 6435 GGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGA 6487 ||||| || |||||||| || || | ||| | ||||| ||||| || Sbjct 21012 GGCTTCATCAATAAGTTTGTCCTCTGCAAAAAGTGCAAGAACCCAGAGACTGA 21064 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334942378958411