Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cerataphis_20brasiliensis_20yeast- like_20symbiont_20[genbank_20GCA_5F000372705.1_202013-04-22] 1,181 sequences; 25,465,455 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq677 174 2e-38 seq780 105 8e-18 >seq677 Length=7370 Score = 174 bits (192), Expect = 2e-38 Identities = 465/708 (66%), Gaps = 22/708 (3%) Strand=Plus/Plus Query 63018 CCAGTCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTT 63077 |||| || || ||||| | || ||||| | || ||| || |||| | || ||| || | Sbjct 5684 CCAGGCCGGGGCATTCGTTGGGGCACATGAGCGTCCAATCGCCGTTTTTCTCCACGCGCT 5743 Query 63078 TCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGT 63137 |||| || || || |||||||| || || | || || || | || | | ||||| | Sbjct 5744 TCATGAACAGGTCCGGAATCCACAGGGCCAGGAAGAGGTCGCGGGCCCGAACCTCCTCCT 5803 Query 63138 TTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGT 63197 | || ||||| ||||| || ||| | | | ||| | |||||||| ||||||| Sbjct 5804 TGCCATGGTTCTTGCGCAGATCCAGAAACTCAAACACATCGGCGTGCCACGGCTCCAAGT 5863 Query 63198 ATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTAT 63257 ||||||| | | || ||||| ||||| || ||||| || | ||| | || || || | Sbjct 5864 ATATGGCAAAGGCACCTGGCCGCTTGTTGCCGCCCTGGTCGACGTAGCGGGCCGTATTGT 5923 Query 63258 TATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGC 63317 | | || | | ||| ||||| | ||| || || || || ||||| || | || || Sbjct 5924 TGAAGACACGAAGCATGGGAATGACACCGTTCGAAGTCCCGTTGGTGCCGGCAATGTAAG 5983 Query 63318 TTCCACTGGCACGAAT--ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGAT 63375 || | ||||| || | | ||| || || || || || ||||| || ||||| Sbjct 5984 AACCGGTAGCACGGATCCGATGCACGTTG--AGCCCGATGCCGCCGGCCATCTTGGAGAT 6041 Query 63376 TAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAG 63435 | |||||| || | ||| || ||||||||||| || || || ||| |||||| || Sbjct 6042 CATGGCGCATGTCTTGAGCGTGTCGTAGATGCCCTCGATGCTGTCCTCCTTCATGTCAAC 6101 Query 63436 TAGAAAACAGCTAGACATTTGGTGAC---GACTAGTTCCCGCATTAAATAAGGTAGGAGA 63492 || | ||| ||| | |||| || || || || || || | || || || Sbjct 6102 GAGGA---AGCACGACGAAAGCTGACACTGAGGCGTGCCGGCGTTGAACAGCGTCGGCGA 6158 Query 63493 AGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATAT- 63551 || || || || | || || | || ||||||||||| | || ||| |||| Sbjct 6159 CGCATGGGTGAAGAACTTGCTGGACATGAGGTTGTACGTCTCGAGGACTCGGTCGATATT 6218 Query 63552 -----CCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAAC 63606 ||||| || || || || || ||||| | |||||| ||||| | ||||| Sbjct 6219 GCCGCCCCAT------ATACCCACGGCAACGCGCATGATCATGTGTTGAGGGCGCTCAAC 6272 Query 63607 GATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTT 63666 ||||||| || | || | ||| || || ||||| || || || |||||||| | Sbjct 6273 GATCTTGCCGTCGAGCTTGAGCAAATAAGAACGTTCCAGTGTCTTGAAGCCAAAATACTG 6332 Query 63667 GTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTT 63714 ||| |||||| || || || || || |||||| ||| ||||||| Sbjct 6333 GTAGTTAAAGTCCCGGTCATAGATGATGGCCGAGTCGAGCCTATCCTT 6380 >seq780 Length=34333 Score = 105 bits (116), Expect = 8e-18 Identities = 223/332 (67%), Gaps = 3/332 (1%) Strand=Plus/Minus Query 32883 GTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATC 32942 || || |||||||| ||||||||| | | | | || || | ||||||||| ||| Sbjct 30348 GTTTCAATAGCATTGAAGAGATAGGTCCGCTGGGCATTCTCCTTGATATATGTATCGATC 30289 Query 32943 AAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCAT 33002 | || || | || || || ||||| || || || ||||||||||||||||| Sbjct 30288 AGGAGGGAGTATGTCTCGGAGTGGATGTTCTCCATCATGATCTGAAATCCGTAGAAGCAA 30229 Query 33003 CTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATT 33062 | ||||||| ||||| || || | || || || | || ||||| || || || Sbjct 30228 CGGGCCTCGGGGATCTGAACCTCGCCGCTGAACCGCTCAACCAAGTTTTCGTTGACGATG 30169 Query 33063 CCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT 33122 ||||| ||| |||||||| |||| | || | ||| || |||||||| | Sbjct 30168 CCGTCCGAGGCGGCAAAAAAGGCCAGGATGTGGGAAACAAAGTACTTTTCGTCATCATTC 30109 Query 33123 A---GTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAAT 33179 | | || ||||| || | | || || || | ||| | ||| || |||||||||| Sbjct 30108 AGGCGGTTGTTCCAGTCGTGCAAGTCCTTGGAGAGATCGATTTCCTCGGCTGTCCAAAAG 30049 Query 33180 GATGCCTCTGCCTTTTTATACATATTCCAGAT 33211 || ||||||||||| || ||||| | ||| || Sbjct 30048 GAGGCCTCTGCCTTCTTGTACATTTGCCAAAT 30017 Score = 93.3 bits (102), Expect = 5e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 32660 ACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAG 32719 ||| || ||||| ||| | |||||| |||| ||| | |||||||||||| || | Sbjct 30645 ACAGGCAAAATCCGTGTGCAAACCCTCATCTCGCGAAATGAGTTCGTTGGAAAAGGTCAA 30586 Query 32720 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAA 32779 || |||||||||||||| || || ||||| || ||||| ||||| | ||| ||||| Sbjct 30585 GCCAGGCATTAGGCCACGTTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCACTGAAGAA 30526 Query 32780 AATTCCTTCTACTGCCGCAAAGGC 32803 || || || || || |||||||| Sbjct 30525 GATGCCCTCGACCGCAGCAAAGGC 30502 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633622646007600