Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cerataphis_20brasiliensis_20yeast- like_20symbiont_20[genbank_20GCA_5F000372705.1_202013-04-22] 1,181 sequences; 25,465,455 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq598 141 8e-29 seq1010 100 2e-16 seq677 82.4 6e-11 >seq598 Length=71582 Score = 141 bits (156), Expect = 8e-29 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || || || || || || ||| ||||||| ||||| ||| | || Sbjct 950 ATGCAAATATTCGTCAAGACGTTGACTGGCAAGACGATCACTCTGGAAGTCGAATCGTCC 1009 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || | || ||| ||||| ||||||||||| ||||| || |||||| Sbjct 1010 GACACCATCGATAATGTGAAGTCAAAGATTCAGGACAAGGAGGGCATTCCCCCGGATCAA 1069 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || ||||| || || ||| | |||||| || || | ||||| ||||| Sbjct 1070 CAGCGCCTGATCTTTGCTGGTAAGCAGCTCGAGGATGGTCGAACTCTGTCCGACTACAAT 1129 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||| ||||| ||||| | ||| | || | || |||||||| ||| Sbjct 1130 ATTCAGAAAGAGTCCACGTTGCATCTTGTCCTTCGTTTGCGCGGCGGT 1177 Score = 134 bits (148), Expect = 1e-26 Identities = 152/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 || || || ||| |||||||||| || || | | ||||| | || || |||| Sbjct 746 ACTGGCAAGACGATCACTCTTGAGGTAGAGTCGTCTGATACTATCGATAATGTCAAGTCC 805 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || || ||||||||||||||||| ||||| |||||||| | || |||||||| ||| Sbjct 806 AAGATCCAGGACAAGGAGGGTATTCCTCCCGACCAACAACGCTTGATCTTTGCCGGAAAA 865 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 ||||| |||||| | | ||| | ||||| ||||| ||||| ||||| || || ||||| Sbjct 866 CAGTTGGAGGATGGCAGGACCCTGTCCGACTACAATATTCAGAAAGAGTCAACGCTACAT 925 Query 22423 TTAGTTTTGCGATTGCGCGGAGGT 22446 | || | || |||||||| ||| Sbjct 926 CTTGTCCTTCGCTTGCGCGGTGGT 949 Score = 98.7 bits (108), Expect = 8e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| || ||| | || || || ||| | || | ||||| ||| | | Sbjct 1406 ATGCAAATCTTTGTCAAGACTCTGACGGGAAAGACGATTACCTTGGAAGTTGAATCTTCG 1465 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | ||| | | || ||||| ||||||||||| || ||||| ||||| ||| Sbjct 1466 GATACGATTGACAACGTGAAGTCGAAAATACAAGACAAGGAAGGCATTCCTCCCGACCAA 1525 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || |||||||| || ||||| | || ||| || || | ||| || ||| Sbjct 1526 CAGCGCCTCATATTTGCTGGAAAACAACTGGAAGATGGACGTACTCTGAGCGACTATAAC 1585 Query 22399 ATTCAAAAAGAA 22410 ||||| |||||| Sbjct 1586 ATTCAGAAAGAA 1597 >seq1010 Length=27177 Score = 100 bits (110), Expect = 2e-16 Identities = 130/180 (72%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 22227 TTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGT 22286 ||| || || || |||| || || || |||| || || || || | | || || | Sbjct 25696 TTTCGTAAAGACCCTAACGGGCAAGACCATCACCCTCGAGGTCGAGTCGTCGGACACGAT 25637 Query 22287 GGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCT 22346 || || ||||| || ||||| || |||||||| ||||| || ||||||||||| || Sbjct 25636 CGATAATGTCAAATCCAAGATTCAGGATAAGGAGGGCATTCCTCCGGATCAACAACGACT 25577 Query 22347 TATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAA 22406 || || |||||||| ||| | ||||| ||| || | |||||||||||||| ||||| Sbjct 25576 GATCTTCGCCGGCAAGCAGCTTGAGGACGGCCGAACGCTGTCCGATTACAACATCCAAAA 25517 >seq677 Length=7370 Score = 82.4 bits (90), Expect = 6e-11 Identities = 184/273 (67%), Gaps = 5/273 (2%) Strand=Plus/Plus Query 130123 TCGGCGTGCCACGGTTCAACATAAATTGCCATTGCGCCCTTCCG---TTTGCCCCCTTGG 130179 |||||||||||||| || | || || || | || || ||| ||||| || ||| Sbjct 5842 TCGGCGTGCCACGGCTCCAAGTATATGGCAAAGGCACCTGGCCGCTTGTTGCCGCCCTGG 5901 Query 130180 TCAACGTGGCGCACGGCATTGTTGTAGACTCGCAACATTGCCTCCAATCCGTTGGCCGTG 130239 || |||| ||| | | ||||||| |||| || | ||| | | ||||| | || Sbjct 5902 TCGACGTAGCGGGCCGTATTGTTGAAGACACGAAGCATGGGAATGACACCGTTCGAAGTC 5961 Query 130240 CCGTTTGTGCTCTCAATGAAACTGCCACGAGCCCGAACGTTATGAACGCTTAGACCTATG 130299 ||||| |||| ||||| || || ||| || | ||| ||| | || || ||| Sbjct 5962 CCGTTGGTGCCGGCAATGTAAGAACCGGTAGCACGGATCCGATGCACGTTGAGCCCGATG 6021 Query 130300 CCGCCGCCAAATTTTGATATCAACGCGCA-ATCGCGTAGCGTTTCATAAATGCCAACGAT 130358 |||||| | | || || |||| ||||| || | ||||| || || ||||| |||| Sbjct 6022 CCGCCGGCCATCTTGGAGATCATGGCGCATGTCTTG-AGCGTGTCGTAGATGCCCTCGAT 6080 Query 130359 ACTGTCTTCTTTAATGTTTAGGAGGAAACACGA 130391 ||||| || || |||| | |||||| ||||| Sbjct 6081 GCTGTCCTCCTTCATGTCAACGAGGAAGCACGA 6113 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419721958671265