Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cerataphis_20brasiliensis_20yeast- like_20symbiont_20[genbank_20GCA_5F000372705.1_202013-04-22] 1,181 sequences; 25,465,455 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq574 176 8e-39 seq598 161 2e-34 seq1010 143 5e-29 seq780 100 5e-16 >seq574 Length=30825 Score = 176 bits (194), Expect = 8e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || ||||||||||||| || | ||| || ||| ||| || |||||||| || ||| Sbjct 26569 CCACCGCGAAGGCGCAGGACGAGGTGCAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCTC 26628 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || | |||||||| | |||||| ||||| || ||||| | || |||||||| ||| Sbjct 26629 ATGGTTCGGCCATCTTCGAGCTGCTTTCCGGCAAAGATGAGGCGCTGCTGGTCGGGGGGA 26688 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| ||||| || |||||||| | ||||||| ||||||||||| | || || || Sbjct 26689 ATGCCCTCCTTATCCTGAATCTTGGACTTGACGTTATCGATGGTGTCAGAAGACTCCACC 26748 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||| || || ||||||||||| |||||||| |||||||| Sbjct 26749 TCAAGGGTGATTGTCTTCCCCGTGAGGGTTTTGACGAAGATCTGCAT 26795 >seq598 Length=71582 Score = 161 bits (178), Expect = 2e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| || || |||| || | ||| | ||||||||||| |||||||| || || ||| Sbjct 1404 CCTCCACGCAGACGCAGGACGAGGTGCAAAGTGGACTCTTTCTGGATGTTGTAGTCAGAG 1345 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || |||| ||||| || | || || || |||||||| || | || ||||| || || Sbjct 1344 AGGGTCCGGCCATCCTCAAGTTGTTTTCCAGCGAATATCAGGCGCTGCTGGTCAGGAGGG 1285 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| ||||| || |||||||| | ||||||| ||||||||||| | ||||| ||| Sbjct 1284 ATGCCCTCCTTATCCTGAATCTTGGACTTGACGTTGTCGATGGTGTCGGACGATTCGACT 1225 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| || || || || || || | ||||||||||| || ||||| Sbjct 1224 TCCAACGTAATCGTCTTGCCGGTTAATGTCTTGACGAAGATTTGCAT 1178 Score = 154 bits (170), Expect = 3e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 68234 TCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGA 68293 ||| || || ||||||| || | ||| | ||| ||||| || |||||||| ||| Sbjct 1633 TCCACCACGGAGGCGCAGCACAAGGTGCAAAGTGCTTTCTTTCTGAATGTTATAGTCGCT 1574 Query 68294 GAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGG 68353 || || | |||||||| | || || || || |||||||| | ||||||||||| || Sbjct 1573 CAGAGTACGTCCATCTTCCAGTTGTTTTCCAGCAAATATGAGGCGCTGTTGGTCGGGAGG 1514 Query 68354 AATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTAC 68413 |||||||||||||||||| || || | ||| ||| || || || || | ||||| || Sbjct 1513 AATGCCTTCCTTGTCTTGTATTTTCGACTTCACGTTGTCAATCGTATCCGAAGATTCAAC 1454 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||||||| || || |||||||| || |||||||| || || ||||| Sbjct 1453 TTCCAAGGTAATCGTCTTTCCCGTCAGAGTCTTGACAAAGATTTGCAT 1406 Score = 150 bits (166), Expect = 3e-31 Identities = 159/208 (76%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 68255 CAAG-TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTA 68313 |||| || | |||||||||||| || || || || ||||| || || | ||||| || | Sbjct 1157 CAAGATGCAACGTGGACTCTTTCTGAATATTGTAGTCGGACAGAGTTCGACCATCCTCGA 1098 Query 68314 ACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAA 68373 |||||| || || || || || | ||||| || || |||||||| |||||||| |||| Sbjct 1097 GCTGCTTACCAGCAAAGATCAGGCGCTGTTGATCCGGGGGAATGCCCTCCTTGTCCTGAA 1038 Query 68374 TCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTC 68433 |||||| ||| || ||||||||||| | ||||| ||||||| ||||| || || | Sbjct 1037 TCTTTGACTTCACATTATCGATGGTGTCGGACGATTCGACTTCCAGAGTGATCGTCTTGC 978 Query 68434 CCGTGAGGGTCTTGACGAATATCTGCAT 68461 | || | |||||||||||||| ||||| Sbjct 977 CAGTCAACGTCTTGACGAATATTTGCAT 950 Score = 131 bits (144), Expect = 3e-25 Identities = 152/205 (74%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || ||||| | ||| | || | |||||||| |||||||| || || || || ||||| Sbjct 948 CCACCGCGCAAGCGAAGGACAAGATGTAGCGTTGACTCTTTCTGAATATTGTAGTCGGAC 889 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || ||||| ||||| || ||||| || ||||| || || | | |||||||||||| ||| Sbjct 888 AGGGTCCTGCCATCCTCCAACTGTTTTCCGGCAAAGATCAAGCGTTGTTGGTCGGGAGGA 829 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| || ||||| | |||||| ||||| || || | || ||||| Sbjct 828 ATACCCTCCTTGTCCTGGATCTTGGACTTGACATTATCGATAGTATCAGACGACTCTACC 769 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGA 68439 || | ||||| || || || |||| Sbjct 768 TCAAGAGTGATCGTCTTGCCAGTGA 744 >seq1010 Length=27177 Score = 143 bits (158), Expect = 5e-29 Identities = 139/179 (78%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 68274 TTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATG 68333 ||||||||||| |||||||| || || | || || || | |||||| |||||||| || Sbjct 25517 TTTTGGATGTTGTAATCGGACAGCGTTCGGCCGTCCTCAAGCTGCTTGCCGGCGAAGATC 25576 Query 68334 AGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCG 68393 |||| |||||| || || |||||||| ||||| || |||||||| | ||||| ||| Sbjct 25577 AGTCGTTGTTGATCCGGAGGAATGCCCTCCTTATCCTGAATCTTGGATTTGACATTATCG 25636 Query 68394 ATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAA 68452 || ||||| | || || || || | ||||||||| || ||||| |||||||| ||||| Sbjct 25637 ATCGTGTCCGACGACTCGACCTCGAGGGTGATGGTCTTGCCCGTTAGGGTCTTTACGAA 25695 >seq780 Length=34333 Score = 100 bits (110), Expect = 5e-16 Identities = 170/244 (70%), Gaps = 2/244 (1%) Strand=Plus/Minus Query 9935 CATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTC 9994 |||||| || ||||||||||| || ||||| || || ||||||| ||||||| | Sbjct 30948 CATGACACCGGCCTTCTGGTAGTCACCGACCCGTTTTTCAAAAAAGTTGGTCTTGCCCCC 30889 Query 9995 GAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCCAAACTGCTTGGGGTAACC 10054 || || ||| |||||||| |||||||||||| | | || ||| || || Sbjct 30888 TAGCGATATGTTTTCCATGAAATCAAAGGGGTTCGACGACCTGTACACCTTTTCGTTGCC 30829 Query 10055 GAGTGCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCGAGTT 10114 || || | || |||||| || ||||||||||| ||||| |||||| | | ||| Sbjct 30828 CAGGGCGACTAGAAGGCGGTCGGCAACGAACTCGATATACTGCTTCATCAAGGTGGCGTT 30769 Query 10115 CATGCC-AATCATGCGGCAGGGGATGGCGTCGCAAATGAAGTCCTTTTCGTTGGCGACCG 10173 |||||| | | |||| |||||| | ||| ||| | || || | |||| ||| ||| | Sbjct 30768 CATGCCGAGTAATGC-GCAGGGCAGGGCTTCGGTGAGAAATTCTTGTTCGATGGTGACGG 30710 Query 10174 CTTC 10177 | || Sbjct 30709 CATC 30706 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921608794549320