Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cerataphis_20brasiliensis_20yeast- like_20symbiont_20[genbank_20GCA_5F000372705.1_202013-04-22] 1,181 sequences; 25,465,455 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq677 396 5e-105 seq780 167 4e-36 >seq677 Length=7370 Score = 396 bits (438), Expect = 5e-105 Identities = 1047/1579 (66%), Gaps = 71/1579 (4%) Strand=Plus/Plus Query 244090 GTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGG 244149 ||| |||||||| ||||| |||| ||||||||| |||||||| | |||| || || Sbjct 4845 GTTGACCACCTGGAACTCGCCCGCCAGCACGCGTCGCTGGTAAATGTTGGACGTGTAAGG 4904 Query 244150 CTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACAC 244209 ||||| || ||| | ||||| || ||||||| |||||| || ||||||||||| | || Sbjct 4905 CTCGAAGCACTCGTTATTGCCGAGGATCTGCGACGTGCTGGCCGTCGGCATGGGGGCTAC 4964 Query 244210 CAGCAGACTGTTCCTCACGCCGTGCCTCTGGATGCGGAGTCTGAGCTCGTTCCAGTCCCA 244269 |||||||||||| | | ||| ||| || ||| | | ||| | ||| ||||| Sbjct 4965 CAGCAGACTGTTGCGTATGCCATGCTCCTTGATCTGCTCCCGTAGCGTTTCCCACTCCCA 5024 Query 244270 CATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTT-GC 244328 | | || ||| | || | || ||||||||||||||| |||| |||| | Sbjct 5025 GAGCTCTGA-AGG-CTTCACCTT-------CCACATGTCAAACTGGAGCACGCCCTCCGA 5075 Query 244329 TGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCT---TACAG- 244384 | ||| | | |||| | | || |||||| || |||| || |||||||| | || Sbjct 5076 CGCCGGCGAT-CCCTTAAACGACGAGTAGGGCCCTTCGCTCTTGGCCAGCTCCATCGAGG 5134 Query 244385 CTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCC 244444 | ||| | |||||||| ||||||||| |||||||| || ||| | || |||||| Sbjct 5135 CACTC----AAGGCGGCGTGGTAGATGGTTTCGAAGATTTGCTGGTTTAGCTCCCGGGCC 5190 Query 244445 TTGCCGCAGGTG--AAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGC 244502 | ||| || || || |||| | || || | |||||||| ||||| || | Sbjct 5191 T--CCGGAGACTCAAACGGCATGCGGAGAGCCAGAAAAGCATCGGCCAGGCCCTGGACAC 5248 Query 244503 CGATGCCGATGGGTCTGTGTCGCTTGTTGGAGCGCATGGCTTCGGGCACGGGGTAAAAGT 244562 | | || || || | ||| ||| ||||| | ||| || || |||||| || Sbjct 5249 CCACACCAATCGGCCGGTGCCGCATGTTGCTGTTGCGGGCCTCTTCAACTGGGTAATGGT 5308 Query 244563 TGCCGTCGATCACCTTGTTGAGGTTGCGGGTGATCA--TGCGGACGACGTCGGCCAGCAG 244620 || ||||||| | | | |||||||| ||| || | |||| || ||| ||| Sbjct 5309 TGACGTCGATGATCCTATTGAGGTTACGGACGACAACCTGCGTC--ACCTCGTGGAGCTT 5366 Query 244621 CTGAAAGTCGTACTCGTAGGGATCCTCGGCGATGGTGATCCTC-ACAAACTCGTTGAGGG 244679 ||| |||||||| | || || | || || ||||| | |||| Sbjct 5367 CTGGAAGTCGTAG-------------CAGCCCTGTTCATAGTCGACAAAGGCAGGCAGGG 5413 Query 244680 CGACGCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTG--GTGTACTGGACAATCTC 244737 | | |||||| ||||||||||| || || || || || | ||||| ||| || || Sbjct 5414 CTAGTGAGGCCAGATTGCAGACGGCGACTTCGTC--AGGTGCCGAGTACTCGACGATTTC 5471 Query 244738 GGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCA 244797 ||||| ||||| | | ||||||||||||| || ||||| |||| |||||| Sbjct 5472 CGTGCAAAGGTTCGAACTCCGAATGGTGCCCAGGTTCTTTTGATTACTCTTGCGGTTGCA 5531 Query 244798 GGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTT 244857 | ||||||||| ||||| ||||| || || || ||| || | |||| | Sbjct 5532 GTGGTCCTTGTACAGCATAAAGGGATTGCCCGTTTCCGTCTGTGCTTCCAGGATAGAATA 5591 Query 244858 CCAGAGGTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTA 244917 |||||| | | |||| |||||| |||| | |||||| |||||| ||| Sbjct 5592 CCAGAGCTTCTGAGCCCGCACCGTCTTGCGGCCACGGCCCTCGCGCTCGTACTTTTCGTA 5651 Query 244918 CAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCA--CGACGCCGGGCAC 244975 ||| ||||| || || || || ||| | ||||||||||| || | |||||| Sbjct 5652 CAGAGCCTCAAATTCATCACCGTAGCAGTCGGCCAGGCCGGGGCATTCGTTG--GGGCAC 5709 Query 244976 ATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGG 245035 ||||| |||| |||||| | || || | || |||||| ||||| || ||||| ||| Sbjct 5710 ATGAGCGTCCAATCGCCGTTTTTCTCCACGCGCTTCATGAACAGGTCCGGAATCCACAGG 5769 Query 245036 GCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAA 245095 ||| |||||||||| | || || ||| ||| |||| |||||| | ||| |||| | Sbjct 5770 GCCAGGAAGAGGTCGCGGGCCCGAACCTCCTCCTTGCCATGGTTCTTGCGCAGATCCAGA 5829 Query 245096 AAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTG 245155 || ||||| || ||| ||||||| ||||||| ||| | || | ||| || ||||||||| Sbjct 5830 AACTCAAACACATCGGCGTGCCACGGCTCCAAGTATATGGCAAAGGCACCTGGCCGCTTG 5889 Query 245156 TTGCCTCCCTGGTCCACCATCCTCTCGAGC----GCGTTGAAGATGCGCAGGGTAGGCAC 245211 ||||| |||||||| | | | || || |||||||| || || | || | Sbjct 5890 TTGCCGCCCTGGTCGA----CGTAGCGGGCCGTATTGTTGAAGACACGAAGCATGGGAAT 5945 Query 245212 TATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCT 245271 | ||||| || ||||||||||| ||||| | || | | | || | Sbjct 5946 GACACCGTTCGAAGTCCCGTTGGTGCCGGCAATGTAAGAACCGGTAGCACGGA----TCC 6001 Query 245272 GATGGAC----ATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGG 245327 |||| || | || | |||||||| ||||||||| | |||||| |||||| | Sbjct 6002 GATGCACGTTGAGCCCGATGCCGCCGGCCATCTTGGAGATCATGGCGCATGTCTTGAGCG 6061 Query 245328 TGTCTGCTATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCT 245387 |||| |||||||| ||||||||| |||||||| | || ||||| || || |||| Sbjct 6062 TGTCGTAGATGCCCTCGATGCTGTCCTCCTTCATGTCAACGAGGAAGCACGACGAAAGCT 6121 Query 245388 GGGGCTTGGGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAGTAGCGGCTCG 245447 | || || ||| | ||||||||| || || || ||||| ||| | ||| | Sbjct 6122 GACACTGAGGCGTGCCGGCGTTGAACAGCGTCGGCGACGCATGGGTGAAGAACTTGCTGG 6181 Query 245448 AGAGGAACCCGTACGTCTGGAGCAGAGCGTCGATGTTGTCGCCGTGGATCTGCAGGGCGC 245507 | | || |||||||| ||| | |||||| ||| |||| || || ||| Sbjct 6182 ACATGAGGTTGTACGTCTCGAGGACTCGGTCGATATTGCCGCCCCATATACCCACGGCAA 6241 Query 245508 ACCTCATGAGGGTGTGCTG-GGGCG-TC-TCGATGGGTCCCTCGGGTCCCTTGAGCATGT 245564 | ||||| |||| || ||||| || |||| || ||| | |||||||| | Sbjct 6242 CGCGCATGATCATGTGTTGAGGGCGCTCAACGATCTTGCCGTCGAG---CTTGAGCAAAT 6298 Query 245565 AGGAGCGCTCGAGCGTCTTGAACCCAAAGTACGAGTAGCCAAAGTCGGCGTGGTGCCTGA 245624 | || || || || |||||||| ||||| ||| |||| |||||| || | ||| Sbjct 6299 AAGAACGTTCCAGTGTCTTGAAGCCAAAATACTGGTAGTTAAAGTCCCGGTCATAGATGA 6358 Query 245625 CGGCTGCGTCGAGTCTCTC 245643 ||| | |||||| || || Sbjct 6359 TGGCCGAGTCGAGCCTATC 6377 >seq780 Length=34333 Score = 167 bits (184), Expect = 4e-36 Identities = 307/444 (69%), Gaps = 11/444 (2%) Strand=Plus/Plus Query 42706 TGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCT 42765 ||||||||||| | || |||||||||||||||||| || ||||| ||||||||||||| Sbjct 30497 TGGTAGCCTTTGCTGCGGTCGAGGGCATCTTCTTCAGTGGTGCCTTTGCCTCCATCTTCT 30556 Query 42766 GGCTCAAGCAGAAGGTGTC--GATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAG 42823 |||||||| || ||| | ||||| || | ||||| || ||||||||||| | Sbjct 30557 GGCTCAAG--AAACGTGGCCTAATGCCTGGCTTGACCTTTTCCAACGAACTCATTTCGCG 30614 Query 42824 GGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAA 42883 || ||||| |||| | ||| |||||||| ||||| |||| ||| ||| || Sbjct 30615 AGATGAGGGTTTGCACACGGATTTTGCCTGTCTCCTACACTCG---CACTTCAAAAACCG 30671 Query 42884 GCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTT 42943 | || || || ||| | ||||||||| || ||||| ||||| | || || Sbjct 30672 GGCCAGCAAACAGGTCATCCATGACATCATCACCGATGCCGTCACCATCGAACAAGAATT 30731 Query 42944 CCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTA 43003 ||||| | | |||||| | | ||||||||||| | | | ||| |||| Sbjct 30732 TCTCACCGAAGCCCTGCCCTGCGCATTACTCGGCATGAACGCCACCTTGATGAAGCAGTA 30791 Query 43004 CATCCAGTACGTCGCCGACCATCTCCT-GT-GCCAGATGGGTCTCAGCCGCCTCTACAAC 43061 ||| ||| ||| ||||||| || || || ||| |||| | | |||| Sbjct 30792 TATCGAGTTCGTTGCCGACCGCCTTCTAGTCGCC--CTGGGCAACGAAAAGGTGTACAGG 30849 Query 43062 ACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTC 43121 || || |||||| || || ||||| ||||| ||| | | |||||||||||||||||| Sbjct 30850 TCGTCGAACCCCTTTGATTTCATGGAAAACATATCGCTAGGGGGCAAGACCAACTTTTTT 30909 Query 43122 GAGAAGCGCGTCGCCGACTACCAG 43145 || || || |||| ||||||||| Sbjct 30910 GAAAAACGGGTCGGTGACTACCAG 30933 Score = 109 bits (120), Expect = 1e-18 Identities = 176/250 (70%), Gaps = 5/250 (2%) Strand=Plus/Plus Query 42309 ATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTGGCCAAGGAC 42368 |||||||||||||| || |||| ||||| |||||||| || || || |||||||| Sbjct 30026 ATGTACAAGAAGGCAGAGGCCTCCTTTTGGACAGCCGAGGAAATCGATCTCTCCAAGGAC 30085 Query 42369 ACGGCCGGCTGGGAGTCACTGTCTGA--GA--ACGAAAAGTTTTTCCTCAAAAACATACT 42424 | || |||| | || | |||| || ||||||||| || | |||| || Sbjct 30086 TTGCACGACTGGAACA-ACCGCCTGAATGATGACGAAAAGTACTTTGTTTCCCACATCCT 30144 Query 42425 GGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATGAA 42484 |||||| || |||||||| |||||||| ||||| || ||| ||| |||||| Sbjct 30145 GGCCTTTTTTGCCGCCTCGGACGGCATCGTCAACGAAAACTTGGTTGAGCGGTTCAGCGG 30204 Query 42485 AGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAACGT 42544 ||||| ||| | ||||| || ||||||||||| || ||||| || |||||| | Sbjct 30205 CGAGGTTCAGATCCCCGAGGCCCGTTGCTTCTACGGATTTCAGATCATGATGGAGAACAT 30264 Query 42545 GCACTCTGAG 42554 ||||| ||| Sbjct 30265 CCACTCCGAG 30274 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944325259192560