Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cerataphis_20brasiliensis_20yeast- like_20symbiont_20[genbank_20GCA_5F000372705.1_202013-04-22] 1,181 sequences; 25,465,455 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq598 156 1e-32 seq1010 98.7 2e-15 >seq598 Length=71582 Score = 156 bits (172), Expect = 1e-32 Identities = 178/239 (74%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 288235 ATTCATACATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATA 288294 ||||||| |||||||| ||||| | || || || || | ||||||||||| || || Sbjct 1644 ATTCATAACTGTCCACCACGGAGGCGCAGCACAAGGTGCAAAGTGCTTTCTTTCTGAATG 1585 Query 288295 TTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGT 288354 ||||||||| || || ||||| ||||| | ||||||||| || || || || |||||| Sbjct 1584 TTATAGTCGCTCAGAGTACGTCCATCTTCCAGTTGTTTTCCAGCAAATATGAGGCGCTGT 1525 Query 288355 TGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCG 288414 || || || ||||| || || || ||||||| |||||||| || || | ||| Sbjct 1524 TGGTCGGGAGGAATGCCTTCCTTGTCTTGTATTTTCGACTTCACGTTGTCAATCGTATCC 1465 Query 288415 CTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| ||||| | || |||||||| || |||||||||||||| || || ||||| Sbjct 1464 GAAGATTCAACTTCCAAGGTAATCGTCTTTCCCGTCAGAGTCTTGACAAAGATTTGCAT 1406 Score = 132 bits (146), Expect = 1e-25 Identities = 168/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || ||||| | | ||| || ||||| | |||| ||||| || ||||| ||||||| Sbjct 1176 CCGCCGCGCAAACGAAGGACAAGATGCAACGTGGACTCTTTCTGAATATTGTAGTCGGAC 1117 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || || || || | || || || || |||||||| ||||||||| || ||| Sbjct 1116 AGAGTTCGACCATCCTCGAGCTGCTTACCAGCAAAGATCAGGCGCTGTTGA---TCCGGG 1060 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || || || || ||||| || || | ||||| || || || | ||| |||||| Sbjct 1059 GGAATGCCCTCCTTGTCCTGAATCTTTGACTTCACATTATCGATGGTGTCGGACGATTCG 1000 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| || ||||||||||| || |||| |||||||||||||| ||||| Sbjct 999 ACTTCCAGAGTGATCGTCTTGCCAGTCAACGTCTTGACGAATATTTGCAT 950 Score = 131 bits (144), Expect = 4e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 288262 AGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCT 288321 || ||||| || | ||| ||||| ||||| || ||||| | ||| || || || || Sbjct 1389 AGGACGAGGTGCAAAGTGGACTCTTTCTGGATGTTGTAGTCAGAGAGGGTCCGGCCATCC 1330 Query 288322 TCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCC 288381 || | ||||||||| ||||| ||||| ||||| || | ||||| || || |||||| Sbjct 1329 TCAAGTTGTTTTCCAGCGAATATCAGGCGCTGCTGGTCAGGAGGGATGCCCTCCTTATCC 1270 Query 288382 TGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTC 288441 || || || | || ||||| || || | ||| |||||| ||||| | ||| |||||| Sbjct 1269 TGAATCTTGGACTTGACGTTGTCGATGGTGTCGGACGATTCGACTTCCAACGTAATCGTC 1210 Query 288442 TTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| | ||||||||||| || ||||| Sbjct 1209 TTGCCGGTTAATGTCTTGACGAAGATTTGCAT 1178 Score = 96.9 bits (106), Expect = 8e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 |||||||| | | ||| || ||||| | ||| ||||| || ||||| ||||||| Sbjct 948 CCACCGCGCAAGCGAAGGACAAGATGTAGCGTTGACTCTTTCTGAATATTGTAGTCGGAC 889 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || | || || || || |||||||| || ||||||| || ||||| || Sbjct 888 AGGGTCCTGCCATCCTCCAACTGTTTTCCGGCAAAGATCAAGCGTTGTTGGTCGGGAGGA 829 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || |||||||| || | || || || || |||| ||| ||| ||||| Sbjct 828 ATACCCTCCTTGTCCTGGATCTTGGACTTGACATTATCGATAGTATCAGACGACTCTACC 769 Query 288427 TCGAGCGTGATCGTCTTCCCGGT 288449 || || ||||||||||| || || Sbjct 768 TCAAGAGTGATCGTCTTGCCAGT 746 >seq1010 Length=27177 Score = 98.7 bits (108), Expect = 2e-15 Identities = 129/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 288286 TTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATC 288345 |||||||| || || |||| ||||| || ||||| || | || || || ||||||||| Sbjct 25517 TTTTGGATGTTGTAATCGGACAGCGTTCGGCCGTCCTCAAGCTGCTTGCCGGCGAAGATC 25576 Query 288346 AGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCT 288405 || || |||||| || || || || |||||||| || || | ||| || || || Sbjct 25577 AGTCGTTGTTGATCCGGAGGAATGCCCTCCTTATCCTGAATCTTGGATTTGACATTATCG 25636 Query 288406 ATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAA 288464 || | || ||| || || ||||| ||||| ||||| || || || ||||| ||||| Sbjct 25637 ATCGTGTCCGACGACTCGACCTCGAGGGTGATGGTCTTGCCCGTTAGGGTCTTTACGAA 25695 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179636549985718