Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cerataphis_20brasiliensis_20yeast- like_20symbiont_20[genbank_20GCA_5F000372705.1_202013-04-22] 1,181 sequences; 25,465,455 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq598 118 1e-21 seq1010 109 6e-19 seq574 91.5 2e-13 >seq598 Length=71582 Score = 118 bits (130), Expect = 1e-21 Identities = 159/219 (73%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 41991 AAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGC 42050 ||||| | || | |||||| ||| ||| || ||||||||||| || | |||||| || Sbjct 1167 AAACGAAGGACAAGATGCAACGTGGACTCTTTCTGAATATTGTAGTCGGACAGAGTTCGA 1108 Query 42051 TCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCC 42110 | || || |||||||||||||| || || || ||||| || || | || | || |||| Sbjct 1107 CCATCCTCGAGCTGCTTACCAGCAAAGATCAGGCGCTGTTGATCCGGGGGAATGCCCTCC 1048 Query 42111 TTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGT 42169 |||||| ||| | |||| || | | | | |||||| |||||| || || | || Sbjct 1047 TTGTCC-TGAATCTTTGACTTCACATTATCGATGGTGTCGGACGATTCGACTTCCAGAGT 989 Query 42170 GATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||| || ||||| || | |||||| || || |||||||| Sbjct 988 GATCGTCTTGCCAGTCAACGTCTTGACGAATATTTGCAT 950 Score = 116 bits (128), Expect = 4e-21 Identities = 167/230 (73%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 |||||| | | ||||| || | ||||| ||| ||| || || || ||||| |||| Sbjct 1405 ACCTCCACGCAGACGCAGGACGAGGTGCAAAGTGGACTCTTTCTGGATGTTGTAGTCAGA 1346 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 || ||||| | || || || || || ||||||||||| || ||||||||||| | || Sbjct 1345 GAGGGTCCGGCCATCCTCAAGTTGTTTTCCAGCGAATATCAGGCGCTGCTGGTCAGGAGG 1286 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCG-CCACCGTGTCGCTCGATTCC 42158 | || |||||| ||| ||| | || | |||| ||| | | | |||||| |||||| Sbjct 1285 GATGCCCTCCTTATCC-TGAATCTTGGACTTGA-CGTTGTCGATGGTGTCGGACGATTCG 1228 Query 42159 ACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || || | ||| || || ||||| |||| ||||| || ||||||||||| Sbjct 1227 ACTTCCAACGTAATCGTCTTGCCGGTTAATGTCTTGACGAAGATTTGCAT 1178 Score = 98.7 bits (108), Expect = 1e-15 Identities = 153/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 41994 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 42053 |||| ||| | ||||| ||||| || || ||||| || || || |||||| || | Sbjct 1620 CGCAGCACAAGGTGCAAAGTGCTTTCTTTCTGAATGTTATAGTCGCTCAGAGTACGTCCA 1561 Query 42054 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTG 42113 || || || || || ||||| |||||||| ||||| ||||||| || | || |||||| Sbjct 1560 TCTTCCAGTTGTTTTCCAGCAAATATGAGGCGCTGTTGGTCGGGAGGAATGCCTTCCTTG 1501 Query 42114 TCCATGATTTTTTGTTTGAGCGTCGCCAC-CGTGTCGCTCGATTCCACATCGACCGTGAT 42172 || ||||| || | ||| | || ||| || ||||| || || | || || Sbjct 1500 TCTTGTATTTTCGACTTCA-CGTTGTCAATCGTATCCGAAGATTCAACTTCCAAGGTAAT 1442 Query 42173 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || || ||||| || ||||| |||||||||||||| Sbjct 1441 CGTCTTTCCCGTCAGAGTCTTGACAAAGATTTGCAT 1406 >seq1010 Length=27177 Score = 109 bits (120), Expect = 6e-19 Identities = 135/182 (74%), Gaps = 2/182 (1%) Strand=Plus/Plus Query 42019 CCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATA 42078 ||||||| || |||||||| | ||| || || |||| || |||||||| || ||||| | Sbjct 25515 CCTTTTGGATGTTGTAATCGGACAGCGTTCGGCCGTCCTCAAGCTGCTTGCCGGCGAAGA 25574 Query 42079 TGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTC 42137 | ||||| || || || | || | || |||||| ||| ||| | || | ||||| | Sbjct 25575 TCAGTCGTTGTTGATCCGGAGGAATGCCCTCCTTATCC-TGAATCTTGGATTTGACATTA 25633 Query 42138 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 42197 | | |||||| ||| || || |||| |||||||| ||||||||||| |||||||| Sbjct 25634 TCGATCGTGTCCGACGACTCGACCTCGAGGGTGATGGTCTTGCCCGTTAGGGTCTTTACG 25693 Query 42198 AA 42199 || Sbjct 25694 AA 25695 >seq574 Length=30825 Score = 91.5 bits (100), Expect = 2e-13 Identities = 146/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 42006 TGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGC 42065 |||| ||||||||||| || || ||||| || || || || | || || |||||| Sbjct 26593 TGCAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCTCATGGTTCGGCCATCTTCGAGCTGC 26652 Query 42066 TTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTT 42125 || || || || ||||| ||||||||||||| || | || |||||| ||| ||| | || Sbjct 26653 TTTCCGGCAAAGATGAGGCGCTGCTGGTCGGGGGGAATGCCCTCCTTATCC-TGAATCTT 26711 Query 42126 TG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGT 42184 | |||| | | | ||||| || ||||| || | ||||| || || ||||| Sbjct 26712 GGACTTGACGTTATCGATGGTGTCAGAAGACTCCACCTCAAGGGTGATTGTCTTCCCCGT 26771 Query 42185 TAGCGTCTTTACAAAGATTTGCATTTT 42211 || || || || ||||| ||||| || Sbjct 26772 GAGGGTTTTGACGAAGATCTGCATCTT 26798 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543204780821040