Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cerataphis_20brasiliensis_20yeast- like_20symbiont_20[genbank_20GCA_5F000372705.1_202013-04-22] 1,181 sequences; 25,465,455 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq598 114 1e-20 seq574 84.2 2e-11 >seq598 Length=71582 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 |||||||||||| | ||| || ||||| | ||| || ||||| ||||| ||||| || | Sbjct 1177 ACCGCCGCGCAAACGAAGGACAAGATGCAACGTGGACTCTTTCTGAATATTGTAGTCGGA 1118 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | || || | || || |||||||| || ||| | || || ||||| || || || || Sbjct 1117 CAGAGTTCGACCATCCTCGAGCTGCTTACCAGCAAAGATCAGGCGCTGTTGATCCGGGGG 1058 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||| || || || || || || ||| ||| ||| || | || || | || || Sbjct 1057 AATGCCCTCCTTGTCCTGAATCTTTGACTTCACATTATCGATGGTGTCGGACGATTCGAC 998 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||| | ||| | |||||||| ||||| || || ||||| |||||||| Sbjct 997 TTCCAGAGTGATCGTCTTGCCAGTCAACGTCTTGACGAATATTTGCAT 950 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 64252 TTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATA 64311 |||||| |||||||| || || | || || | ||||| || || || || ||| | Sbjct 1597 TTCTTTCTGAATGTTATAGTCGCTCAGAGTACGTCCATCTTCCAGTTGTTTTCCAGCAAA 1538 Query 64312 AATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAAC 64371 ||||| ||||| |||||||||||||| ||||| || ||||||||||| ||| || Sbjct 1537 TATGAGGCGCTGTTGGTCGGGAGGAATGCCTTCCTTGTCTTGTATTTTCGACTTCACGTT 1478 Query 64372 CTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTAC 64431 || | ||||| | || ||||| | || | ||||| || |||| ||| || || Sbjct 1477 GTCAATCGTATCCGAAGATTCAACTTCCAAGGTAATCGTCTTTCCCGTCAGAGTCTTGAC 1418 Query 64432 GAAAATTTGCAT 64443 || |||||||| Sbjct 1417 AAAGATTTGCAT 1406 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| |||||||| | ||| || ||||| | ||| || ||||| ||||| ||||| || | Sbjct 949 ACCACCGCGCAAGCGAAGGACAAGATGTAGCGTTGACTCTTTCTGAATATTGTAGTCGGA 890 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||| | | || || | ||| || |||||| | || | || || ||||||||||| Sbjct 889 CAGGGTCCTGCCATCCTCCAACTGTTTTCCGGCAAAGATCAAGCGTTGTTGGTCGGGAGG 830 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||| || || || || || || || ||| ||| || | |||||| | || || Sbjct 829 AATACCCTCCTTGTCCTGGATCTTGGACTTGACATTATCGATAGTATCAGACGACTCTAC 770 Query 64396 TTCTACAGTTACGGTCTTGCCGGT 64419 || | ||| | |||||||| || Sbjct 769 CTCAAGAGTGATCGTCTTGCCAGT 746 Score = 82.4 bits (90), Expect = 8e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || |||| | || || || || | || || ||||| || |||||||| || | Sbjct 1405 ACCTCCACGCAGACGCAGGACGAGGTGCAAAGTGGACTCTTTCTGGATGTTGTAGTCAGA 1346 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 || ||| || | || ||||| || || || || | || || ||||||||||| ||||| Sbjct 1345 GAGGGTCCGGCCATCCTCAAGTTGTTTTCCAGCGAATATCAGGCGCTGCTGGTCAGGAGG 1286 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 || || || || || || || || ||| || || | || || | || || Sbjct 1285 GATGCCCTCCTTATCCTGAATCTTGGACTTGACGTTGTCGATGGTGTCGGACGATTCGAC 1226 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||| | || | ||||||||||| || || || ||||| |||||||| Sbjct 1225 TTCCAACGTAATCGTCTTGCCGGTTAATGTCTTGACGAAGATTTGCAT 1178 >seq574 Length=30825 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 64253 TCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAA 64312 || || || |||||||| || | ||| || | ||||| |||||||| |||||| | Sbjct 26605 TCCTTCTGGATGTTGTAGTCGCTCATGGTTCGGCCATCTTCGAGCTGCTTTCCGGCAAAG 26664 Query 64313 ATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACC 64372 ||||| |||||||||||||| ||||| || || || || || || || ||| || Sbjct 26665 ATGAGGCGCTGCTGGTCGGGGGGAATGCCCTCCTTATCCTGAATCTTGGACTTGACGTTA 26724 Query 64373 TCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACG 64432 || | || ||| | ||||| || | || | ||||| || || | ||||| ||| Sbjct 26725 TCGATGGTGTCAGAAGACTCCACCTCAAGGGTGATTGTCTTCCCCGTGAGGGTTTTGACG 26784 Query 64433 AAAATTTGCATTTT 64446 || || ||||| || Sbjct 26785 AAGATCTGCATCTT 26798 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499637423993640