Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cerataphis_20brasiliensis_20yeast- like_20symbiont_20[genbank_20GCA_5F000372705.1_202013-04-22] 1,181 sequences; 25,465,455 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq598 120 3e-22 seq677 118 1e-21 seq574 100 3e-16 seq1010 95.1 1e-14 >seq598 Length=71582 Score = 120 bits (132), Expect = 3e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 || ||||| || || | || | ||| | ||| |||||||| ||||||||||| ||| | Sbjct 1176 CCGCCGCGCAAACGAAGGACAAGATGCAACGTGGACTCTTTCTGAATATTGTAGTCGGAC 1117 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || ||| ||| || ||||| || ||||| |||||| ||||| ||||| || || Sbjct 1116 AGAGTTCGACCATCCTCGAGCTGCTTACCAGCAAAGATCAGGCGCTGTTGATCCGGGGGA 1057 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTG-CTTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||||||||||||| ||| | | || ||| | | |||| |||||| | ||||| Sbjct 1056 ATGCCCTCCTTGTCC-TGAATCTTTGACTTCACATTATCGATGGTGTCGGACGATTCGAC 998 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||| | || | ||| ||||| |||| || || || || || ||||| Sbjct 997 TTCCAGAGTGATCGTCTTGCCAGTCAACGTCTTGACGAATATTTGCAT 950 Score = 102 bits (112), Expect = 8e-17 Identities = 113/151 (75%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| || || | || | ||||| ||| |||||||| ||||||||||| ||| | Sbjct 948 CCACCGCGCAAGCGAAGGACAAGATGTAGCGTTGACTCTTTCTGAATATTGTAGTCGGAC 889 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || | ||| || | ||||||||| || ||||||| || || || |||||||| Sbjct 888 AGGGTCCTGCCATCCTCCAACTGTTTTCCGGCAAAGATCAAGCGTTGTTGGTCGGGAGGA 829 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA 127037 || |||||||||||| ||| || ||||| Sbjct 828 ATACCCTCCTTGTCCTGGATCTTGGACTTGA 798 Score = 100 bits (110), Expect = 3e-16 Identities = 139/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 126923 TCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAG 126982 ||||| ||||| || || |||| || || || ||| || || ||||||||||| | Sbjct 1596 TCTTTCTGAATGTTATAGTCGCTCAGAGTACGTCCATCTTCCAGTTGTTTTCCAGCAAAT 1537 Query 126983 ATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTG 127041 || | ||||| || |||||||| ||||| |||||||| |||||| ||| | |||| Sbjct 1536 ATGAGGCGCTGTTGGTCGGGAGGAATGCCTTCCTTGTCTTGTATTTTCGACTTCACGTTG 1477 Query 127042 TTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTAC 127101 || | || |||| | || ||||| | ||| | ||| || || |||||||| || || Sbjct 1476 -TCAATCGTATCCGAAGATTCAACTTCCAAGGTAATCGTCTTTCCCGTCAGAGTCTTGAC 1418 Query 127102 AAAAATCTGCAT 127113 ||| || ||||| Sbjct 1417 AAAGATTTGCAT 1406 Score = 98.7 bits (108), Expect = 9e-16 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || |||||||| || || ||||| || | || || ||| || || ||||||||| Sbjct 1374 GTGGACTCTTTCTGGATGTTGTAGTCAGAGAGGGTCCGGCCATCCTCAAGTTGTTTTCCA 1315 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| | |||| |||||||| || ||||| ||||||||||| ||| || || |||| Sbjct 1314 GCGAATATCAGGCGCTGCTGGTCAGGAGGGATGCCCTCCTTATCCTGAATCTTGGACTTG 1255 Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | |||| |||| |||||| | |||||||| | || | ||| |||||||| | || Sbjct 1254 ACGTTG-TCGATGGTGTCGGACGATTCGACTTCCAACGTAATCGTCTTGCCGGTTAATGT 1196 Query 127096 TTTTACAAAAATCTGCAT 127113 || || || || ||||| Sbjct 1195 CTTGACGAAGATTTGCAT 1178 >seq677 Length=7370 Score = 118 bits (130), Expect = 1e-21 Identities = 843/1324 (64%), Gaps = 62/1324 (5%) Strand=Plus/Plus Query 146034 CAAGTCTACGAGGGCCTTGATGAGATACTGGTTGACCACCTGAAACTCGCCGGCGAGAAC 146093 |||||| || ||| |||||| || | ||||||||||||| |||||||| || || || Sbjct 4815 CAAGTCAACCAGGTCCTTGAGCAGCCAGGGGTTGACCACCTGGAACTCGCCCGCCAGCAC 4874 Query 146094 GCGCCTCAGATACACGTTGCTGGTGAACGGCTCGAACGACTCGTTGTTACCGAGTATCTG 146153 ||| | | | || | |||| ||| | |||||||| ||||||| || ||||| ||||| Sbjct 4875 GCGTCGCTGGTAAATGTTGGACGTGTAAGGCTCGAAGCACTCGTTATTGCCGAGGATCTG 4934 Query 146154 CGCCGTCGTAGCGGTAGGCATGTACGCCACCAGCAAAGAGTTTCTCACGCCGTG-TCTTT 146212 || ||| | || || |||||| || ||||||| | ||| | | ||| || || || Sbjct 4935 CGACGTGCTGGCCGTCGGCATGGGGGCTACCAGCAGACTGTTGCGTATGCCATGCTCCTT 4994 Query 146213 GAATCTTTTCCCGTAGTTTGGACCAATTCCACAAATGATCCGTGGGATAGATATTGTAGT 146272 | |||| |||||||| | ||| | ||| | | || | || | | || | Sbjct 4995 G-ATCTGCTCCCGTAGCGTTTCCCACTCCCAGA---GCTCTGAAGGCTTCACCTTCCACA 5050 Query 146273 TGTCGTAATGCATAGTGCCGCGGAACAGGGGGCTAT-TCTCGTACGATTCATAAGGACCG 146331 |||| | || | ||| || | ||| || || |||| || || || Sbjct 5051 TGTCAAACTGGAGCACGCCCTCCGAC-GCCGGCGATCCCTTAAACGACGAGTAGGGCCCT 5109 Query 146332 TCGATCTTGGCCAGTTCGCAGCTA-GCTTCCAGAGCCGAAAAGTATATGGTCTCCGCGAT 146390 ||| |||||||||| || || | | || || || | ||| ||||| || ||| Sbjct 5110 TCGCTCTTGGCCAGCTC-CATCGAGGCACTCAAGGCGGCGTGGTAGATGGTTTCGAAGAT 5168 Query 146391 CATGTAGTTGACGCT-CCTGGCCTCCTCGCTGTCGTAGGGGATATCGAGAAGCACAAAGG 146449 | ||| | ||| || ||||||| || | || || |||| || ||| | Sbjct 5169 TTGCTGGTTTA-GCTCCCGGGCCTCCGGAGACTCAAACGGCATGCGGAGAGCCAGAAAAG 5227 Query 146450 CGTCGGCGAGACCCTGTATCCCGACACCAACGGGGCGGTGTTTCTTGTTACTGTTCGCAG 146509 | ||||| || ||||| | || ||||||| || ||||| | |||| ||||| | Sbjct 5228 CATCGGCCAGGCCCTGGACACCCACACCAATCGGCCGGTGCCGCATGTTGCTGTTGCGGG 5287 Query 146510 CGCCCGCAGTGGGATAGTGGTTGCTGTCGATGATCTTGTTGAGATTACGCACGACAATTT 146569 | | || || || |||||| |||||||||| | ||||| ||||| ||||||| | Sbjct 5288 CCTCTTCAACTGGGTAATGGTTGACGTCGATGATCCTATTGAGGTTACGGACGACAACCT 5347 Query 146570 TCGTCA------AACGATTCAGCAGGACATAGTCAAATGTTTTAGTTTTAACGTTGACGC 146623 ||||| | ||| | | | | ||| || | || | || ||| Sbjct 5348 GCGTCACCTCGTGGAGCTTCTGGAAGTCGTAG-CAGCCCT-----GTTCATAGTCGACAA 5401 Query 146624 ACTTGTTGACGGCGATAGAGGCCAAGTTACATACGGCAGTCTCGTC-CTTGTCGCAATAC 146682 | | ||| | ||||||| || || ||||| ||||| || || | ||| Sbjct 5402 AGGCAGGCAGGGCTAGTGAGGCCAGATTGCAGACGGCGACTTCGTCAGGTGCCG-AGTAC 5460 Query 146683 TGCACAATCTCGGCGCAGAGGTTGCTGCACTTGATGATGCCCAAAtttttttGGTTACTA 146742 | || || || | ||| ||||| | | ||| |||||| || ||||| ||||| Sbjct 5461 TCGACGATTTCCGTGCAAAGGTTCGAACTCCGAATGGTGCCCAGGTTCTTTTGATTACT- 5519 Query 146743 AACTT---GTTGCAGGGGTCCTTGTAGAGCATGTACGG-TCCCCCGGTTTCGACATTGGT 146798 ||| ||||||| |||||||||| ||||| | || | |||| || || | || | Sbjct 5520 --CTTGCGGTTGCAGTGGTCCTTGTACAGCATAAAGGGATTGCCCGTTTCCGTCTGTGCT 5577 Query 146799 CTCGACGAT-GAATCTAAACAAATC-TCTG-GCCTTTACTTGTCTTTCGTACA-GTTTAT 146854 || | ||| |||| | || | | |||| ||| || ||||| || || | | Sbjct 5578 -TCCAGGATAGAAT---ACCAGAGCTTCTGAGCCCGCAC-CGTCTTGCGGCCACGGCCCT 5632 Query 146855 TCTTTTCGTATTTCTCGTACAATATTTCAAAACTAGAACCGTACTCGTCGAGGAGGCCGG 146914 ||||| || ||||||| ||||| | |||||| |||| ||||||| Sbjct 5633 CGCGCTCGTACTTTTCGTACAGAGCCTCAAATTCATCACCGTAGCAGTCGGCCAGGCCGG 5692 Query 146915 GATACTTTTTGGGACAGAACAGCGACCATTCTTTATTCTCCTTCACGCGTTCCATAAACA 146974 | | | ||||| || | |||| ||| || || | || |||||| | ||| |||| Sbjct 5693 GGCATTCGTTGGGGCACATGAGCGTCCAATCGCCGTTTTTCTCCACGCGCTTCATGAACA 5752 Query 146975 AATCGGGAATCCAAAGGCCCAGCATCAAGTCGCGAGCCTTGGCGTCCTCGGAGCCCATGT 147034 || |||||||| ||| |||| | | |||||| ||| | ||||| | ||||| Sbjct 5753 GGTCCGGAATCCACAGGGCCAGGAAGAGGTCGCGGGCCCGAACCTCCTCCTTG-CCATGG 5811 Query 147035 TGCGT-CTCAAGTTGAGGACATCGTAAATTTCCGGATGCCAAGGCTCCACGTATGCGGCG 147093 | | | | || | || | || | | || | ||||| ||||||| |||| ||| Sbjct 5812 TTCTTGCGCAGATCCAGAAACTCAAACACATCGGCGTGCCACGGCTCCAAGTATATGGCA 5871 Query 147094 AGTGCGCCTTTTCGC---TTACCGCCCTGATCGACGTGGCGCACCATGTTATTGAAGACT 147150 | || ||| ||| || |||||||| ||||||| ||| || | || |||||||| Sbjct 5872 AAGGCACCTGGCCGCTTGTTGCCGCCCTGGTCGACGTAGCGGGCCGTATTGTTGAAGACA 5931 Query 147151 CGTAACATGGACACGAGGCCG-CCGGATT--TTGTGGTGCCG---TTGTA------TTGA 147198 || | ||||| | || ||| || | | |||||||| |||| | Sbjct 5932 CGAAGCATGGGAATGACACCGTTCGAAGTCCCGTTGGTGCCGGCAATGTAAGAACCGGTA 5991 Query 147199 GCGCTGACGCTTTGCACGCTCAGCCCGAGACCTCCGCCCAGATTCGAAATCAAAGCGGA- 147257 || | || | |||||| | ||||||| || ||| ||| || || |||| ||| | Sbjct 5992 GCACGGATCCGATGCACGTTGAGCCCGATGCCGCCGGCCATCTTGGAGATCATGGCGCAT 6051 Query 147258 CTCGTGCAAGGTCTTGTAGATGCCGTCGATGCTGTCTTCCTTGATG-CATTGCAGGAAAC 147316 || || | || | ||||||||| ||||||||||| ||||| ||| || | ||||| | Sbjct 6052 GTCTTG-AGCGTGTCGTAGATGCCCTCGATGCTGTCCTCCTTCATGTCAACG-AGGAAGC 6109 Query 147317 ACGA 147320 |||| Sbjct 6110 ACGA 6113 >seq574 Length=30825 Score = 100 bits (110), Expect = 3e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943 || |||||||| | |||| || | || | || ||| || || || ||||| ||| Sbjct 26566 GCGCCACCGCGAAGGCGCAGGACGAGGTGCAGAGTGCTCTCCTTCTGGATGTTGTAGTCG 26625 Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003 | ||| || || ||| || ||||| ||||| || |||| | |||||||| ||||| Sbjct 26626 CTCATGGTTCGGCCATCTTCGAGCTGCTTTCCGGCAAAGATGAGGCGCTGCTGGTCGGGG 26685 Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCG 127063 || ||||||||||| ||| || || ||||| | |||| |||||| | | ||| Sbjct 26686 GGAATGCCCTCCTTATCCTGAATCTTGGACTTGACGTTATCGATGGTGTCAGAAGACTCC 26745 Query 127064 ACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || || | ||| | || || || || || ||||| || || |||||||| Sbjct 26746 ACCTCAAGGGTGATTGTCTTCCCCGTGAGGGTTTTGACGAAGATCTGCAT 26795 >seq1010 Length=27177 Score = 95.1 bits (104), Expect = 1e-14 Identities = 129/180 (72%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 126926 TTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATC 126985 ||||| || ||||||||| || ||| || || || ||||| || || ||| ||||| Sbjct 25517 TTTTGGATGTTGTAATCGGACAGCGTTCGGCCGTCCTCAAGCTGCTTGCCGGCGAAGATC 25576 Query 126986 AATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCG 127045 | ||| || ||||| ||||| ||||||||||| ||| || || |||| | ||| Sbjct 25577 AGTCGTTGTTGATCCGGAGGAATGCCCTCCTTATCCTGAATCTTGGATTTGACATTATCG 25636 Query 127046 ACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 127105 | ||||||| |||||| |||| ||| | || ||||| || || || ||||| ||| Sbjct 25637 ATCGTGTCCGACGACTCGACCTCGAGGGTGATGGTCTTGCCCGTTAGGGTCTTTACGAAA 25696 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475493780419440