Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cerataphis_20brasiliensis_20yeast- like_20symbiont_20[genbank_20GCA_5F000372705.1_202013-04-22] 1,181 sequences; 25,465,455 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq677 208 9e-49 seq283 89.7 6e-13 seq686 86.0 8e-12 >seq677 Length=7370 Score = 208 bits (230), Expect = 9e-49 Identities = 852/1327 (64%), Gaps = 31/1327 (2%) Strand=Plus/Plus Query 115876 AACTCACCCGCGAGGGTGCGTCTCAGATAGATGTTGGTCGTGTATGGCTCAAAGCACTCA 115935 ||||| ||||| || ||||| | | || ||||||| |||||| ||||| |||||||| Sbjct 4858 AACTCGCCCGCCAGCACGCGTCGCTGGTAAATGTTGGACGTGTAAGGCTCGAAGCACTCG 4917 Query 115936 TTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTG 115995 || || || | ||| || | ||| ||| || |||||||| || | || || |||||| Sbjct 4918 TTATTGCCGAGGATCTGCGACGTGCTGGCCGTCGGCATGGGGGCTACCAGCAGACTGTTG 4977 Query 115996 CGGAGACCCACCCCCCTAATGCGTTCCTTGAGGGCGTCCCAGTCGTAGTTGAGCTTTGT- 116054 || | || | || | || | ||| || | ||||| || || |||| || Sbjct 4978 CGTATGCCATGCTCCTTGATCTGCTCCCGTAGCGTTTCCCACTCCCAG---AGCTCTGAA 5034 Query 116055 --CTCCCCCTCCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAAT 116112 || | ||| |||||| ||||||||||| | || | ||||| |||||||||| ||| Sbjct 5035 GGCTTCACCTTCCACATGTCAAACTGGAGCACGCCCTCCGACGCCGGCGATCCCTTAAAC 5094 Query 116113 GTCTCATATGGGCCCTCAACCTCCGCCAATTCG---GAGCTCGC-CTCGAGGGCTGCGTG 116168 | | || || || || || |||| || ||| || ||| ||| | ||||| Sbjct 5095 GACGAGTAGGGCCCTTCGCTCTTGGCCAGCTCCATCGAG---GCACTCAAGG-CGGCGTG 5150 Query 116169 ATACATTGTCTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAG 116228 || || || || || || | || | || |||||| || ||||||| | Sbjct 5151 GTAGATGGTTTCGAAGATTTGCTGGTTTAGCTCCCGGGCCTCCGGAGACTCAAACGGCAT 5210 Query 116229 ACGGCACAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCT 116288 ||| | ||| |||| || || || |||||||| | ||||| || || || | Sbjct 5211 GCGGAGAGCCAGAAAAGCATCGGCCAGGCCCTGGACACCCACACCAATCGGCCGGTGCCG 5270 Query 116289 CATATTAGACTTTCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAG 116348 ||| || || || || || || || ||| || ||||| | |||||| || Sbjct 5271 CATGTTGCTGTTGCGGGCCTCTTCAACTGGGTAATGGTTGACGTCGATGATCCTATTGAG 5330 Query 116349 ATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTC 116408 || | |||||||| || | || || ||||| | | | || | | || || Sbjct 5331 GTTACGGACGACAACCTGCGTCACCTCGTGGAGCTTCTGGAAGTCGTAGCAGCC---CTG 5387 Query 116409 TTCATTG---ACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATC 116465 ||||| | ||| | ||| ||||| | ||| |||||||| || || | | || || Sbjct 5388 TTCATAGTCGACAAAGGCAGGCAGGGCTAGTGAGGCCAGATTGCAGACGGCGACTTCGTC 5447 Query 116466 CTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTT 116525 | | |||||| | |||||||| || | || |||||| ||||||||||| ||| Sbjct 5448 AGGTGCCGAGTACTCGACGATTTCCGTGCAAAGGTTCGAACTCCGAATGGTGCCCAGGTT 5507 Query 116526 CTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTC 116585 ||||||||| ||| ||| || |||||||| |||||| | || | ||||| || Sbjct 5508 CTTTTGATTACTCTTGCGGTTGCAGTGGTCCTTGTACAGCATAAAGGGATTGCCCGTTTC 5567 Query 116586 CGTTTGGGACTTGAGAATAGCCTTCCATA-CATCGGCGGCTGGCACAGTGGCGTTGGCTC 116644 ||| || | | || |||| | ||| | | || | | | | ||| || | | | | Sbjct 5568 CGTCTGTGCTTCCAGGATAGAATACCAGAGCTTCTGAGCCCG-CACCGTCTTGCGGCCAC 5626 Query 116645 GCCCCTCCTCCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAGCC-TCTGAG 116703 | ||||| |||||||||| ||| || |||||||| || ||||| ||| || | Sbjct 5627 GGCCCTCGCGCTCGTACTTTTCGTACAGAGCCTCAAATTCATCACCGT-AGCAGTCGGCC 5685 Query 116704 AGCCCTGGTGCCTTATCTGGA-CAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTT 116762 || || || || || ||| || | ||| | ||| | || | ||| || ||||| Sbjct 5686 AGGCCGGG-GCATTCGTTGGGGCACATGAGCGTCCAATCGCCGTTTTTCTCCACGCGCTT 5744 Query 116763 CATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATC 116822 |||||| ||||| || ||||| || ||| |||||| || || ||| | || || | Sbjct 5745 CATGAACAGGTCCGGAATCCACAGGGCCAGGAAGAGGTCGCGGGCCCGAACCTCCTCCTT 5804 Query 116823 CCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTA 116882 || || || |||| |||| ||| || | | ||| ||||||||||| |||| ||| Sbjct 5805 GCCATGGTTCTTGCGCAGATCCAGAAACTCAAACACATCGGCGTGCCACGGCTCCAAGTA 5864 Query 116883 CACCGCGATTGACCCCTTGCGAC----GACCAGCCTGGTTTACATACCTCGCCGTTGCGT 116938 | || | | | ||| || | || |||||| || || | ||||| || Sbjct 5865 TATGGC-AAAGGCACCTGGCCGCTTGTTGCCGCCCTGGTCGACGTAGCGGGCCGTATTGT 5923 Query 116939 TAAATACGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAATACGAG 116998 | || || |||||||| ||||||| ||| | || || || || || ||| || Sbjct 5924 TGAAGACACGAAGCATGGGAATGACACCGTTCGAAGTCCCGTTGGTGCCGGCAATGTAAG 5983 Query 116999 ACTTGTTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTT 117058 | | | || | || || | || | || || || || ||| ||| ||||| Sbjct 5984 AACCGGTAGCACGGATCCGATGCACGTTGAGCCCGATGCCGCCGGCCATCTTGGAGATCA 6043 Query 117059 GTGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGA 117118 ||||| | |||| || ||||||| || ||||| ||| |||| | | | || Sbjct 6044 TGGCGCATGTCTTGAGCGTGTCGTAGATGCCCTCGATGCTGTCCTCCTTCATGTCAACGA 6103 Query 117119 GGAAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGT 117178 ||||||| ||| | || | || || || |||||||| || || || | ||| | Sbjct 6104 GGAAGCACGACGAAAGCTGACACTGAGGCGTGCCGGCGTTGAACAGCGTCGGCGACGCAT 6163 Query 117179 GGATGAA 117185 || |||| Sbjct 6164 GGGTGAA 6170 >seq283 Length=63202 Score = 89.7 bits (98), Expect = 6e-13 Identities = 168/246 (68%), Gaps = 6/246 (2%) Strand=Plus/Minus Query 175925 GCATCTTTGCCACCCATGAGACGCGTCCCAAATTGACCACATGGCTCAAGGAGATTGATA 175984 ||||| ||| ||| |||| || | ||||| | || | ||||||||| ||||| Sbjct 14914 GCATCAGAGCCTCCCTTGAGTCGGGAACCAAAGTTGCCGCTTGGCTCAAGACAATTGACG 14855 Query 175985 TTGTTTGAGCCCATATAGTCATTCGCCAACTTGACAATCGTATCCGCGAGGGAGACTTCA 176044 || || || || | | |||| | |||| || ||| || | | || ||| ||||| Sbjct 14854 TTATTCGATCCAACAAAGTCTTGGGCCAGGCCGATAATGGTCTGCTGCAGTGAGGCTTCA 14795 Query 176045 CCGTGATGGTAGGCCGACTTGTCCGCCACATACGCCGCCAACTGCGCCACCTTCATCTCA 176104 ||||||||||| |||| || |||| || || |||| | | | |||||||| | Sbjct 14794 CCGTGATGGTATGCCGTCTGTTCCGATACGTAACCCGCTAGTTCCACCACCTTCCT---G 14738 Query 176105 TCCTTGA---GGTTCTTGTGGAAGCACGCATACATGACCTTTCTCTGTGAAGGCTTGAGG 176161 ||||||| ||| | ||| |||||||| |||||||| | || |||||||| | Sbjct 14737 TCCTTGACCGCGTTTCGCTTGAAACACGCATAGATGACCTTGCGTTGACCAGGCTTGAAG 14678 Query 176162 CCGTCG 176167 |||||| Sbjct 14677 CCGTCG 14672 >seq686 Length=19048 Score = 86.0 bits (94), Expect = 8e-12 Identities = 214/320 (67%), Gaps = 9/320 (3%) Strand=Plus/Plus Query 12792 AAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCACGTTCATCATTCGCGGGC 12851 ||||||||||| || | | || |||||| | || || ||||| || || || | Sbjct 8733 AAGCCATCCATTTCGGCAAGGATTTGATTCAGTGTGGCCTCTCGTTCCTCGTT-GCCTGT 8791 Query 12852 ATACCACCCGCACTG---CGTTG-CTTACCGACGGCGTCAATTTCGTCAATGAAAACGAT 12907 ||| | || || || | | | ||| || | |||||||| || || ||||| | || Sbjct 8792 ATAGCCCCGGCCTTGTACCCTGGACTTGCCAATAGCGTCAATCTCATCGATGAAGATTAT 8851 Query 12908 ACACGGTTGATTTTCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACC 12967 ||| || ||| | || | || | || | || || ||||| | ||| ||||| Sbjct 8852 ACAAGGAGCATTCTTGCGACCCTCTGCGAACAAGTCGCGTACTCTGGACGAACCCACACC 8911 Query 12968 CACAAACATCTCCACAAAATTGG--CGGCGGAACATTGGATGAAGGGGACGTTGGATTCA 13025 |||||||||||||| ||| | || | | || | || |||| ||| || || Sbjct 8912 CACAAACATCTCCATAAACTCGGACCCACTGACGCT--GAAAAAGGCGACCCCTGACTCT 8969 Query 13026 CCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGGTTTCCCCGCGAGAAGGGCA 13085 || || |||| ||| ||||| ||||| ||||| ||||| || ||||||| ||| Sbjct 8970 CCAGCCGTGGCCTTGGCTAGGAGTGTCTTGCCCGTGCCTGGCGGTCCGGCGAGAATAGCA 9029 Query 13086 CCACGTGGGATCCTGGCACC 13105 ||||| |||||| ||||||| Sbjct 9030 CCACGCGGGATCTTGGCACC 9049 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613498143099960