Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cerataphis_20brasiliensis_20yeast- like_20symbiont_20[genbank_20GCA_5F000372705.1_202013-04-22] 1,181 sequences; 25,465,455 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq574 145 2e-29 seq598 132 1e-25 seq1010 86.0 1e-11 >seq574 Length=30825 Score = 145 bits (160), Expect = 2e-29 Identities = 163/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | |||||| ||||| ||||| |||||| |||| ||||||||| || || Sbjct 26575 CGAAGGCGCAGGACGAGGTGCAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCTCATGGTT 26634 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||||| |||||||||||||| |||||||| ||||||||||| || ||| || Sbjct 26635 CGGCCATCTTCGAGCTGCTTTCCGGCAAAGATGAGGCGCTGCTGGTCGGGGGGAATGCCC 26694 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||||||||| ||| ||| |||| |||||| | | || || || | Sbjct 26695 TCCTTATCCTGAATCTTGGACTTGACGTTATCGATGGTGTCAGAAGACTCCACCTCAAGG 26754 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| |||||||| ||||| || || || || Sbjct 26755 GTGATTGTCTTCCCCGTGAGGGTTTTGACGAAGATCTG 26792 >seq598 Length=71582 Score = 132 bits (146), Expect = 1e-25 Identities = 160/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | |||||| ||||| | ||| ||||| || |||| ||||||||||| | ||| Sbjct 1398 CGCAGACGCAGGACGAGGTGCAAAGTGGACTCTTTCTGGATGTTGTAGTCAGAGAGGGTC 1339 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| || || || ||||| ||||| || || ||||||||||| ||| || || Sbjct 1338 CGGCCATCCTCAAGTTGTTTTCCAGCGAATATCAGGCGCTGCTGGTCAGGAGGGATGCCC 1279 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||||||||| ||| ||| |||| |||||| | | ||| || |||||| Sbjct 1278 TCCTTATCCTGAATCTTGGACTTGACGTTGTCGATGGTGTCGGACGATTCGACTTCCAAC 1219 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || |||||||| || || | || || || || ||||| Sbjct 1218 GTAATCGTCTTGCCGGTTAATGTCTTGACGAAGATTTG 1181 Score = 116 bits (128), Expect = 9e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 |||||||| || | || ||||| || || | |||||||| | || ||| | ||||| Sbjct 1161 AGGACAAGATGCAACGTGGACTCTTTCTGAATATTGTAGTCGGACAGAGTTCGACCATCC 1102 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| || || ||||| || ||||| || ||||| ||| || || ||| Sbjct 1101 TCGAGCTGCTTACCAGCAAAGATCAGGCGCTGTTGATCCGGGGGAATGCCCTCCTTGTCC 1042 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 ||||||||| |||||| |||| |||||| | | ||| || |||| ||||||||| Sbjct 1041 TGAATCTTTGACTTCACATTATCGATGGTGTCGGACGATTCGACTTCCAGAGTGATCGTC 982 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || | || || || || ||||| Sbjct 981 TTGCCAGTCAACGTCTTGACGAATATTTG 953 Score = 114 bits (126), Expect = 3e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| |||||||| | ||| || || || | ||| ||||| || ||| Sbjct 1626 CGGAGGCGCAGCACAAGGTGCAAAGTGCTTTCTTTCTGAATGTTATAGTCGCTCAGAGTA 1567 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||||||||| || ||||| || || ||||| ||||| ||||| ||| ||| ||| Sbjct 1566 CGTCCATCTTCCAGTTGTTTTCCAGCAAATATGAGGCGCTGTTGGTCGGGAGGAATGCCT 1507 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || || || || || ||||||| || | || || | | ||| || ||||| Sbjct 1506 TCCTTGTCTTGTATTTTCGACTTCACGTTGTCAATCGTATCCGAAGATTCAACTTCCAAG 1447 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || |||||||| ||||| ||||| || ||||| ||||| Sbjct 1446 GTAATCGTCTTTCCCGTCAGAGTCTTGACAAAGATTTG 1409 Score = 95.1 bits (104), Expect = 3e-14 Identities = 135/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 |||||||| || || || ||||| || || | |||||||| | || ||||| ||||| Sbjct 933 AGGACAAGATGTAGCGTTGACTCTTTCTGAATATTGTAGTCGGACAGGGTCCTGCCATCC 874 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||| ||| |||||||| ||||| | || || ||||| ||| ||| || || ||| Sbjct 873 TCCAACTGTTTTCCGGCAAAGATCAAGCGTTGTTGGTCGGGAGGAATACCCTCCTTGTCC 814 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| || |||| || || | | ||||| || | ||||||||| Sbjct 813 TGGATCTTGGACTTGACATTATCGATAGTATCAGACGACTCTACCTCAAGAGTGATCGTC 754 Query 199598 TTACCCGTGA 199607 || || |||| Sbjct 753 TTGCCAGTGA 744 >seq1010 Length=27177 Score = 86.0 bits (94), Expect = 1e-11 Identities = 128/182 (70%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 199440 CCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGA 199499 ||||||||| |||||| || | || || | || || || |||||||| |||||||||| Sbjct 25515 CCTTTTGGATGTTGTAATCGGACAGCGTTCGGCCGTCCTCAAGCTGCTTGCCGGCGAAGA 25574 Query 199500 TGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGATT 199559 | || || || || |||||| ||| || || ||||||||||| || || | Sbjct 25575 TCAGTCGTTGTTGATCCGGAGGAATGCCCTCCTTATCCTGAATCTTGGATTTGACATTAT 25634 Query 199560 CGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACAA 199619 ||| ||||| | | || || || | ||||| ||||| ||||| || || || || | Sbjct 25635 CGATCGTGTCCGACGACTCGACCTCGAGGGTGATGGTCTTGCCCGTTAGGGTCTTTACGA 25694 Query 199620 AA 199621 || Sbjct 25695 AA 25696 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178903761074127