Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cerataphis_20brasiliensis_20yeast- like_20symbiont_20[genbank_20GCA_5F000372705.1_202013-04-22] 1,181 sequences; 25,465,455 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq598 127 2e-24 seq574 118 1e-21 seq1010 96.9 4e-15 >seq598 Length=71582 Score = 127 bits (140), Expect = 2e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 46376 AAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGC 46435 ||||| | || |||||||| || ||| || || |||||||||||||| ||||| || Sbjct 1167 AAACGAAGGACAAGATGCAACGTGGACTCTTTCTGAATATTGTAGTCGGACAGAGTTCGA 1108 Query 46436 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCC 46495 | || ||||||||||| || || || |||| |||||| || || | || | || |||| Sbjct 1107 CCATCCTCGAGCTGCTTACCAGCAAAGATCAGGCGCTGTTGATCCGGGGGAATGCCCTCC 1048 Query 46496 TTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTG 46555 |||||| ||||| ||| | | | | |||||| |||||| || |||| ||| Sbjct 1047 TTGTCCTGAATCTTTGACTTCACATTATCGATGGTGTCGGACGATTCGACTTCCAGAGTG 988 Query 46556 ATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || ||||| |||| ||| || || || |||||||| Sbjct 987 ATCGTCTTGCCAGTCAACGTCTTGACGAATATTTGCAT 950 Score = 120 bits (132), Expect = 3e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||| | | ||||| || || ||||| || ||| || ||||| |||||||| || Sbjct 1404 CCTCCACGCAGACGCAGGACGAGGTGCAAAGTGGACTCTTTCTGGATGTTGTAGTCAGAG 1345 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || || || | || || || || || || |||||||||| |||||||||||| | || Sbjct 1344 AGGGTCCGGCCATCCTCAAGTTGTTTTCCAGCGAATATCAGGCGCTGCTGGTCAGGAGGG 1285 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCC-ACCGTGTCGCTCGATTCCAC 46545 | || |||||| ||| ||||| ||||| ||| | | | |||||| |||||| || Sbjct 1284 ATGCCCTCCTTATCCTGAATCTTGGACTTGA-CGTTGTCGATGGTGTCGGACGATTCGAC 1226 Query 46546 ATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| ||| || || ||||| || | || || || ||||||||||| Sbjct 1225 TTCCAACGTAATCGTCTTGCCGGTTAATGTCTTGACGAAGATTTGCAT 1178 Score = 98.7 bits (108), Expect = 1e-15 Identities = 153/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| ||| || ||||| || || || || || || || |||||| ||||| || | Sbjct 1620 CGCAGCACAAGGTGCAAAGTGCTTTCTTTCTGAATGTTATAGTCGCTCAGAGTACGTCCA 1561 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || || || || || || || ||||| | |||||| ||||||| || | || |||||| Sbjct 1560 TCTTCCAGTTGTTTTCCAGCAAATATGAGGCGCTGTTGGTCGGGAGGAATGCCTTCCTTG 1501 Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCAC-CGTGTCGCTCGATTCCACATCCACCGTGAT 46557 || || ||| ||| | ||| | || ||| || ||||| || |||| || || Sbjct 1500 TCTTGTATTTTCGACTTCA-CGTTGTCAATCGTATCCGAAGATTCAACTTCCAAGGTAAT 1442 Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || |||||||| || || |||||||||||||| Sbjct 1441 CGTCTTTCCCGTCAGAGTCTTGACAAAGATTTGCAT 1406 >seq574 Length=30825 Score = 118 bits (130), Expect = 1e-21 Identities = 158/220 (72%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| || || |||| || |||||||| ||||| ||||||||| | || || | Sbjct 26581 CGCAGGACGAGGTGCAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCTCATGGTTCGGCCA 26640 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || ||||||||||| ||||| || || | |||||||||||||| || | || |||||| Sbjct 26641 TCTTCGAGCTGCTTTCCGGCAAAGATGAGGCGCTGCTGGTCGGGGGGAATGCCCTCCTTA 26700 Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATG 46558 ||| ||||| ||||| | | | ||||| || ||||| || | ||||| Sbjct 26701 TCCTGAATCTTGGACTTGACGTTATCGATGGTGTCAGAAGACTCCACCTCAAGGGTGATT 26760 Query 46559 GTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTGC 46598 || || ||||| || ||||| || ||||| ||||| |||| Sbjct 26761 GTCTTCCCCGTGAGGGTTTTGACGAAGATCTGCATCTTGC 26800 >seq1010 Length=27177 Score = 96.9 bits (106), Expect = 4e-15 Identities = 130/181 (72%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 46404 CCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 46463 |||||||||| ||||| ||||| || || || |||| || ||||||||||||||||| | Sbjct 25515 CCTTTTGGATGTTGTAATCGGACAGCGTTCGGCCGTCCTCAAGCTGCTTGCCGGCGAAGA 25574 Query 46464 TCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG 46523 ||| || || || || | || | || |||||| ||| ||||| |||| | Sbjct 25575 TCAGTCGTTGTTGATCCGGAGGAATGCCCTCCTTATCCTGAATCTTGGATTTGACATTAT 25634 Query 46524 CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAA 46583 | | |||||| ||| || || || | |||||||| |||||||| || || || || | Sbjct 25635 CGATCGTGTCCGACGACTCGACCTCGAGGGTGATGGTCTTGCCCGTTAGGGTCTTTACGA 25694 Query 46584 A 46584 | Sbjct 25695 A 25695 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565230055668120