Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cerataphis_20brasiliensis_20yeast- like_20symbiont_20[genbank_20GCA_5F000372705.1_202013-04-22] 1,181 sequences; 25,465,455 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq780 152 5e-32 seq574 113 5e-20 seq598 104 2e-17 seq1010 96.9 3e-15 >seq780 Length=34333 Score = 152 bits (168), Expect = 5e-32 Identities = 343/508 (68%), Gaps = 18/508 (4%) Strand=Plus/Minus Query 132604 TTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGC 132663 || || || || || ||| ||| |||||||| || || || ||| | | || ||| Sbjct 30935 TTCTGGTAGTCACCGACCCGTTTTTCAAAAAAGTTGGTCTTGCCCCCTAGCGATATGTTT 30876 Query 132664 GTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTT---GGTGCCGATCAGGTCGACG 132720 ||| ||||| |||||||| | | |||| ||| | |||| |||| |||| Sbjct 30875 TCCATGAAATCAAAGGGGTTCGACGACCTGTACACCTTTTCGTTGCC---CAGGGCGACT 30819 Query 132721 AGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACAT---GGTTTCGCAATTAAGTCCC 132777 || || | |||||| ||||||||||| || ||| ||| ||| || || | || Sbjct 30818 AGAAGGCGGTCGGCAACGAACTCGATATACTGCTTCATCAAGGTGGCG---TTCATGCCG 30762 Query 132778 AGCAGA-CGCACCGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGT 132836 || | |||| ||||| |||||||||||||| ||| ||||||| ||| || ||||| Sbjct 30761 AGTAATGCGCAG-GGCAGGGCTTCGGTGAGAAATTCTTGTTCGATGGTGACGGCATCGGT 30703 Query 132837 GACGATTTCCCTAACGCGCGCCGCGCTCGGCCGTTGCACCAAATGCTTGAACATCAAGCA 132896 || ||| || | | | ||| | ||| | || ||| | | | || Sbjct 30702 GATGATGTCATGGATGACCTGTTTGCTGGCCCGGTTTTTGAAGTGCGAGTGTAGGAGACA 30643 Query 132897 AGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCC 132956 ||||| || ||||| ||||| || | ||||||||||||||| || |||||||| Sbjct 30642 GGCAAAATCCGTGTGCAAACCCTCATCTCGCGAAATGAGTTCGTTGGAAAAGGTCAAGCC 30583 Query 132957 GGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGAC 133016 ||||| ||||| ||||| |||||||| || |||| ||| || || ||||||| Sbjct 30582 AGGCATTAGGCCACGTTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCACTGAAGAAGAT 30523 Query 133017 GCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTG--CTGGCG 133074 ||||||||| || || || || |||| ||| | | |||| | | |||| ||| | Sbjct 30522 GCCCTCGACCGCAGCAAAGGCTACCAAGCGTTGAGCAAACGACGAGTTTTTGTCCTG--G 30465 Query 133075 ATCCAGCGCAGCGCCCATTCGGCCTTTT 133102 |||||||| | ||||| ||||| |||| Sbjct 30464 ATCCAGCGAATAGCCCAGTCGGCTTTTT 30437 Score = 138 bits (152), Expect = 1e-27 Identities = 196/275 (71%), Gaps = 3/275 (1%) Strand=Plus/Minus Query 133168 TAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAG 133227 || || ||||| ||| || || | || ||||| | ||||||||| ||| ||||| Sbjct 30300 TATGTATCGATCAGGAGGGAGTATGTCTCGGAGTGGATGTTCTCCATCATGATCTGAAAT 30241 Query 133228 CCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTT 133287 ||||| ||||| || |||||| | ||| || || ||| ||||| |||| ||| Sbjct 30240 CCGTAGAAGCAACGGGCCTCGGGGATCTGAACCTCGCCGCTGAACCGCTCAACCAAGTTT 30181 Query 133288 TCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGC 133347 ||||||||||||||||| |||||| ||||||||||| | ||| | || | Sbjct 30180 TCGTTGACGATGCCGTCCGAGGCGGCAAAAAAGGCCAGGATGTGGGAAACAAAGTACTTT 30121 Query 133348 TCGTTGTCGTTCAAGCG---CTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCG 133404 |||| || |||| ||| | ||||||| || ||||||||| || || | |||||| Sbjct 30120 TCGTCATCATTCAGGCGGTTGTTCCAGTCGTGCAAGTCCTTGGAGAGATCGATTTCCTCG 30061 Query 133405 ACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439 | |||||||| || ||||| || || |||||||| Sbjct 30060 GCTGTCCAAAAGGAGGCCTCTGCCTTCTTGTACAT 30026 >seq574 Length=30825 Score = 113 bits (124), Expect = 5e-20 Identities = 160/220 (73%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || ||||| ||||| |||||||| || || |||||| | || || ||| | Sbjct 26798 AAGATGCAGATCTTCGTCAAAACCCTCACGGGGAAGACAATCACCCTTGAGGTGGAGTCT 26739 Query 38301 ACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 | |||| | | | |||| | || || || | || || ||||| |||||| |||| Sbjct 26738 TCTGACACCATCGATAACG-TCAAGTCCAAGATTCAGGATAAGGAGGGCATTCCCCCCGA 26680 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 ||| ||||| ||||| | || || || ||||| || || | || ||| | | |||||| Sbjct 26679 CCAGCAGCGCCTCATCTTTGCCGGAAAGCAGCTCGAAGATGGCCGAACCATGAGCGACTA 26620 Query 38420 CAACATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCG 38458 ||||||||| ||||| ||| || ||||| | || ||||| Sbjct 26619 CAACATCCAGAAGGAGAGC-ACTCTGCACCTCGTCCTGCG 26581 >seq598 Length=71582 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||||||||| || ||| | || ||||| || ||||| | || ||||| | || Sbjct 950 ATGCAAATATTCGTCAAGACGTTGACTGGCAAGACGATCACTCTGGAAGTCGAATCGTCC 1009 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || ||| || | ||||| ||||| |||||| | || ||| Sbjct 1010 GACACCATCGATAATGTGAAGTCAAAGATTCAGGACAAGGAGGGCATTCCCCCGGATCAA 1069 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || || | || || || ||||| || || | || || || ||||||||| Sbjct 1070 CAGCGCCTGATCTTTGCTGGTAAGCAGCTCGAGGATGGTCGAACTCTGTCCGACTACAAT 1129 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 || || || || | ||| ||||| | || || |||||| | ||||| Sbjct 1130 ATTCAGAAAGAGTCCACGTTGCATCTTGTCCTTCGTTTGCGCGGCGG 1176 Score = 89.7 bits (98), Expect = 5e-13 Identities = 153/217 (71%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || || || || ||||| || || || ||| | || || || | | Sbjct 1406 ATGCAAATCTTTGTCAAGACTCTGACGGGAAAGACGATTACCTTGGAAGTTGAATCTTCG 1465 Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | || |||| | || ||||| | ||||| || || ||||| ||||||| Sbjct 1466 GATACGATTGACAACG-TGAAGTCGAAAATACAAGACAAGGAAGGCATTCCTCCCGACCA 1524 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 |||||| ||||| | || || ||||| ||||| || | || || || | |||||| || Sbjct 1525 ACAGCGCCTCATATTTGCTGGAAAACAACTGGAAGATGGACGTACTCTGAGCGACTATAA 1584 Query 38423 CATCCA-AAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||| || |||| |||| || |||| | |||||||| Sbjct 1585 CATTCAGAAAGAAAGC-ACTTTGCACCTTGTGCTGCG 1620 >seq1010 Length=27177 Score = 96.9 bits (106), Expect = 3e-15 Identities = 130/181 (72%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312 |||||||| || || |||||||| ||||||||| |||| |||||| | | |||| | Sbjct 25695 TTCGTAAAGACCCTAACGGGCAAGACCATCACCCTCGAGGTCGAGTCGTCGGACACGATC 25636 Query 38313 CAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTC 38372 | | | ||| || || | || || ||||| ||||| | || ||||| || || Sbjct 25635 GATAATGTCAAATCCAAGATTCAGGATAAGGAGGGCATTCCTCCGGATCAACAACGACTG 25576 Query 38373 ATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAG 38432 || | ||| ||||| ||||| || |||| || || || ||| ||||||||||||||| Sbjct 25575 ATCTTCGCCGGCAAGCAGCTTGAGGACGGCCGAACGCTGTCCGATTACAACATCCAAAAG 25516 Query 38433 G 38433 | Sbjct 25515 G 25515 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500165416199040