Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cerataphis_20brasiliensis_20yeast- like_20symbiont_20[genbank_20GCA_5F000372705.1_202013-04-22] 1,181 sequences; 25,465,455 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq1133 408 5e-109 seq113 183 4e-41 seq845 86.0 8e-12 >seq1133 Length=6413 Score = 408 bits (452), Expect = 5e-109 Identities = 1050/1586 (66%), Gaps = 21/1586 (1%) Strand=Plus/Plus Query 6568 TTCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGA 6627 |||||| || || || ||||| |||||||| | ||| ||||| ||||| ||||| Sbjct 3990 TTCATCCTCCTCCTTGTACTTCTCCGCATCCGACAGCATACACTCAATTTCTTCCTTCGA 4049 Query 6628 TAATCTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTC 6687 | | ||||| || || ||||| |||||| | ||| || || | | |||| || | Sbjct 4050 CAGACGGCCCTTGTCGTTGGTAATGACAATCTTATTGGACTTGCCGGTGCCCTTTTCAAC 4109 Query 6688 AGCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGT 6747 || ||||||| || || || || |||||||| ||| | || | ||| || || Sbjct 4110 TGCCGAAACATTCATGATGCCGTTAGCGTCAACATCAAACGTGACCTCAATCTGGGGAAC 4169 Query 6748 ACCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGT 6807 ||| | || || | || || || || | |||||| | || |||| | | || ||| | Sbjct 4170 ACCGCGAGGCGCAGGCGGGATGCCGGTGAGCTCAAATTTGCCGAGTAGATTATTGTCCTT 4229 Query 6808 CGCCTTCTTACGTTCACCTTCATAGACTTTAATTGTCACCGCAGGTTGATTATCTTGTGC 6867 | || ||||| || || || || | || || |||||||||| || Sbjct 4230 GGTGCGCTGGCGTTCGCCCTCGTACACCTGGATAAGGACACCAGGTTGATTGTCGGAAAA 4289 Query 6868 CGTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGGT 6927 || ||||||| | ||||| | ||||| || || || | |||||| | | ||| Sbjct 4290 TGTGGAGAAGACCTCGGACTTCTTGGTGGGAATGGTGGTGTTGCGCGGAATCAGCTTGGT 4349 Query 6928 CATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACAG 6987 ||| || || || ||| || | || || |||| || | || |||| ||||||| Sbjct 4350 CATCATGCCGCCAGCAGTCTCAATACCGAGGGACAAGGGGGCGACATCCA---GTAACAG 4406 Query 6988 G---TC-TTGAACAGATTCGTTCCCT---TCACCCGTTAAGATGGCGGCTTGGACCGTCG 7040 || ||| | || | | | || || | ||| ||||| || ||||| | | Sbjct 4407 AATCTCGTTGGTC-GACTTGGACGAAGTATCTCCAGATAAAATGGCAGCCTGGACGGCTG 4465 Query 7041 CCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAAT 7100 | ||||| || || ||||| |||||||| |||| || || | || |||||||| || | Sbjct 4466 CACCGTAGGCAACGGCCTCGTCGGGGTTGATCGACTTGTTGGGCTCCTTACCGTTGAAGT 4525 Query 7101 AATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTT 7160 | || | | | | || || || || ||||| || |||||||| | || || | Sbjct 4526 AGTCGGTAATGAGCTTCTGGATACGGGGAATCCGTGTAGAGCCACCGACGAGGACAATCT 4585 Query 7161 CATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATAC 7220 | | |||| || || ||||| | || ||| ||||| || | || Sbjct 4586 CGTGGACTTGGCTCTTGTCAATCTTGGCATCCGCAAGGACGCGGTCGACTGGCTGAATGG 4645 Query 7221 ATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGA 7280 | |||||||| || || || |||||||| || |||||||||||||| || |||| Sbjct 4646 TTGAGCGGAACAAATCTTGGCAAAGCTCCTCAAAGCGAGCACGGGTAATGGAAGTGTAGA 4705 Query 7281 AATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACG 7340 |||||| || ||| | | || || || ||||| | || || |||| ||||| | | Sbjct 4706 AATCAATACCCTCGAACAGAGAGTCGATCTCAATCGAGGTCTGGGCCGAGGAAGACAGTG 4765 Query 7341 TTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAA 7400 | ||||| || ||||| || || || || | || || |||||||| ||| ||| | Sbjct 4766 TGCGCTTGGCTCGCTCGCAGGCAGTGCGAAGCCGGCGTAGGGCACGGCTGTTCGAGGACA 4825 Query 7401 TATCTTTCTTATGTTTACGTTTAAACTC-TTCAGAGAAGTG-TCGAAGGAGTCTCGAATC 7458 ||| ||||| || || || || || || |||| | ||||| | || || | || Sbjct 4826 AATCCTTCTTGTGCTTGCGCTTGAATTCATTCACA-AAGTGGTTGACCAAG-CGGTTGTC 4883 Query 7459 GAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCC 7518 |||||| ||||| || | || || || || ||||||| |||||||| || || || | Sbjct 4884 GAAATCCTCACCGCCAAGATGGGTGTCGCCAGCGGTCGACTTGACTTCGAAAATTCCCTC 4943 Query 7519 TTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTT 7578 || ||| ||| | || |||||||| ||||||||||||| |||||||||||| ||||| Sbjct 4944 CTCGATGGTTAGGAGGGAGACATCAAAGGTACCACCACCCAAGTCAAAAATGAGGACGTT 5003 Query 7579 CGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATT 7638 ||| | || ||||| || || ||||| || ||||| |||||||| ||||| || Sbjct 5004 GCGCTCGCCCTCCACCTTCTTGTCCAGGCCGTATGCAATAGCGGCCGCCGTGGGTTCGTT 5063 Query 7639 AATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTG 7698 || || || ||| ||||| || || ||| | ||||| || || ||||| ||||| Sbjct 5064 GATGATGCGGAGAACATTCAGACCTGCGATAAGGCCGGCATCCTTGGTGGCTTGACGTTG 5123 Query 7699 CGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATA 7758 || || |||||||| || || || | ||| || | || || | ||| ||||| Sbjct 5124 GCTGTCATTGAAGTAGGCAGGAACAGTGATGACGGCATTGGTAACAGTACCACCCAGATA 5183 Query 7759 CGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAA 7818 || ||| | || ||| || || | |||||||| |||||||| || | | || Sbjct 5184 GCTCTCGGCGGTCTCGCGCATCTTAGTCAACACCATCGAAGAAATCTCCTCGGGTGTGAA 5243 Query 7819 CTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGGGAT 7878 | |||| | || || || || || ||||| |||| || || ||| || | ||| Sbjct 5244 ATTTTTCTTCTCCCCCTTGAACTCGACTTCTATCACAGGCTT-GCCG--GCTTTGTCGAT 5300 Query 7879 AACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTTCC 7938 || ||| | | ||| ||||| ||| | || || | ||| |||||| | || Sbjct 5301 AATTTTAAAAGGGAAATGCTTCATGTCGGCCTGAACTTCAGCGTCGCTAAACTTGCGACC 5360 Query 7939 GATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGC 7998 || | ||||| ||||| ||||| ||||| | |||||||| || ||| |||||||| Sbjct 5361 AATCAATCGCTTCGCATCGAAAACGGTGTTATGAGGGTTCATAGCCACTTGATTCTTCGC 5420 Query 7999 CGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTCG 8058 || || ||||| || || || | || || || || || | || || || || || Sbjct 5421 GGCATCGCCGATCAGGCGCTC---TGTGTCGGTGAAGGCAACAAAGGAGGGAGTAGTCCG 5477 Query 8059 ATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCACGA 8118 || ||||| || || ||||| || || || || | | | ||| ||| |||||||| Sbjct 5478 GTTGCCTTGATCATTGGCAATGATGTCACATCGATCCTCTCGAAAGATGCCCACGCACGA 5537 Query 8119 ATACGTTGTTCCTAAATCAATACCGA 8144 ||||| || |||| ||| || |||| Sbjct 5538 GTACGTGGTACCTAGATCGATGCCGA 5563 >seq113 Length=64593 Score = 183 bits (202), Expect = 4e-41 Identities = 527/792 (67%), Gaps = 28/792 (4%) Strand=Plus/Minus Query 7003 GTTCCCTTCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATC 7062 ||| |||| ||||| |||||| |||| ||||||| || ||||| ||||| ||||| || Sbjct 9025 GTTGCCTT-ACCCGACAAGATGCCGGCCTGGACCGCAGCACCGTAGGCGACGGCCTCGTC 8967 Query 7063 GGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAAT 7122 |||||| || | || | ||| | || |||| |||||| || || | || | || || Sbjct 8966 GGGGTTGATGCTCTTCTCCAGCTTCTTGCCGTCAAAATAGTCGGAGAGCAGCTTCTGGAT 8907 Query 7123 TTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATTTATCG-- 7180 ||||| || || || || || || | ||| || |||| ||| |||||| | | Sbjct 8906 GCGAGGGATACGGGTAGAGCCTCCAACGAGAACAATCTCATCCAC---CGATTTCTTGTC 8850 Query 7181 -ATCTTTGAGTC-TCGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGTCCA 7238 || || || | || | | | || || || | | | | | ||| || Sbjct 8849 AATGCCGGAATCCTTGAGGACCTGGGTA-ACGGGATCGAGGG---TGCCGGAGAAGGCCT 8794 Query 7239 TACAC---AGTTCCTCAAAACGTGCACGGGTAATGG--ATGTATAGAAATCAACGCCGTC 7293 | || ||||| |||||||| ||||| |||| ||| || ||||| ||||||| Sbjct 8793 TGGCGTTGAGGTCCTCGAAACGTGCCCGGGTGATGGTCATGG-TA-AAATCCTCGCCGTC 8736 Query 7294 GTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAA-GATAACGTTCGCTTTGCGC 7352 | | | |||||||| ||||| || | || || | || || | ||| ||||| |||| Sbjct 8735 GAAAAGGGAATCAATCTCAATCGTGGCCTGAGC-GCCGCTCGACAGCGTCCGCTTCGCGC 8677 Query 7353 GCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTAT 7412 |||| || || || || | || || || ||||| |||| ||| | || ||||| Sbjct 8676 GCTCGCAAGCAGTGCGGAGTCGTCGGAGAGCACGAGGGTCTCCGCTCAAGTCCTTCTTGG 8617 Query 7413 GTTTACGTTTAAACTCTTCAGAGAAGTG-TCGAAGGAGTCTCGAATCGAAATCTTCACCA 7471 ||| || || ||||| | | |||| |||| | || | | |||||| || | ||| Sbjct 8616 CTTTTCGGTTGAACTCCTTTTTGCAGTGCTCGA-GCAGGTTGGTATCGAAGTCCTGGCCA 8558 Query 7472 CCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAAC 7531 |||| ||| || || || || || || ||||| ||||| ||| || | |||||| | | Sbjct 8557 CCCAGGTGCGTGTCGCCGGCAGTGGCCTTGACAGTAAAGACACCGCCCTGAATGTTAAGC 8498 Query 7532 AACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTC- 7590 | ||||||||||| ||||||||||| || || ||||||| || || || | ||| Sbjct 8497 AGGGAAACATCAAAGGTACCACCACCAAGATCGTAAATGAGAACATTGCGCTCCTTGTCC 8438 Query 7591 --TTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGA 7648 ||| | || || || ||||| || || || || || || || || || || Sbjct 8437 GACTTGCCAGAGCCAAGGCCATAGGCGATGGCTGCGGCGGTGGGCTCGTTGATGATGCGC 8378 Query 7649 AG-ACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTT 7707 || ||| || || || ||||| | ||||||| || || || || || || || || Sbjct 8377 AGCACA-TTGAGACCGGCAATGGCACCCGCATCCTTGGTGGCCTGGCGCTGGTTGTCATT 8319 Query 7708 AAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGC 7767 ||||| || || || || | ||| || | | ||| ||||| ||||| | | ||||| Sbjct 8318 GAAGTAAGCGGGCACAGTGATGACGGCCTTCTCGACCTTCTTTCCGAGCTTGGTCTCCGC 8259 Query 7768 GATATCTTTCAT 7779 || || ||||| Sbjct 8258 AATCTCCTTCAT 8247 >seq845 Length=3639 Score = 86.0 bits (94), Expect = 8e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 8027 TCCGTAAACGCGACGTACGATGGGGTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCT 8086 ||||| ||||| ||||| || || || ||||| || |||||||| || || || || Sbjct 1061 TCCGTGAACGCCACGTAGCTCGGTGTGGTCCGATTACCCTGGTCGTTGGCGATGATCTCC 1002 Query 8087 ACGCGGTCGTTTTGCCAGACGCCGACGCACGAATACGTTGTTCCTAAATCAATACCGATT 8146 || | ||| |||||||||||| |||||||| ||||| || || | ||| || ||||| Sbjct 1001 ACTTTGCCGTGTTGCCAGACGCCCACGCACGAGTACGTGGTGCCCAGATCGATGCCGATC 942 Query 8147 GC 8148 || Sbjct 941 GC 940 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635123423852040