Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cerataphis_20brasiliensis_20yeast- like_20symbiont_20[genbank_20GCA_5F000372705.1_202013-04-22] 1,181 sequences; 25,465,455 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq677 183 4e-41 seq780 86.0 8e-12 >seq677 Length=7370 Score = 183 bits (202), Expect = 4e-41 Identities = 915/1435 (64%), Gaps = 33/1435 (2%) Strand=Plus/Minus Query 111611 CCCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAG--ATATTGATTCT 111668 ||| || ||||| ||||||| || || | ||||| |||||| | |||| || Sbjct 6264 CCCTCAACACATGATCATGCGCGTTGCCGTGGGTAT--ATGGGGCGGCAATATCGACCGA 6207 Query 111669 GTTTTGGAGACATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACCAACCCTC 111728 || | ||||| ||| || |||||| | | |||| ||| || | || || || Sbjct 6206 GTCCTCGAGACGTACAACCTCATGTCCAGCAAGTTCTTCACCCATGCGTCGCCGACGCTG 6147 Query 111729 TTCAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAG 111788 |||||||| || || || || | || || ||||| ||| | |||||| Sbjct 6146 TTCAACGCCGGCACGCCTCAGTGTCAGCTTTCGTCGTGCTTCCTCGTTGACATGAAGGAG 6087 Query 111789 GATTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCT 111848 || ||| | ||||| |||| ||| |||| ||| ||| ||||| ||| ||| Sbjct 6086 GACAGCATCGAGGGCATCTACGACACGCTCAAGACATGCGCCATGATCTCCAAGATGGCC 6027 Query 111849 GGTGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTATTAGAGGTACA 111908 || || |||||| | || | ||| || | || | | ||| ||| || || Sbjct 6026 GGCGGCATCGGGCTCAACGTGCATCGGATCCGTGCTACCGGTTCTTACATTGCCGGCACC 5967 Query 111909 AATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTAT 111968 || || || | ||| | ||||| |||||||| || || ||| || || ||||| Sbjct 5966 AACGGGACTTCGAACGGTGTCATTCCCATGCTTCGTGTCTTCAACAATACGGCCCGCTAC 5907 Query 111969 GTAAACCAAGCTGG------GCGTCGCAAGGGATCTATCGCAGTCTATCTTGAGCCATGG 112022 || |||| | || ||| || ||| || | || | || | ||||| ||| Sbjct 5906 GTCGACCAGGGCGGCAACAAGCG--GCCAGGTGCCTTTGCCA-TATACTTGGAGCCGTGG 5850 Query 112023 CACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGG 112082 ||||| ||| | | ||||| || || |||| ||||| || | ||||||| ||| Sbjct 5849 CACGCCGATGTGTTTGAGTTTCTGGATCTGCGCAAGAACCATGGCAAGGAGGAGGTTCGG 5790 Query 112083 TGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAG 112142 |||||| |||||| || || |||||||| || || ||||||||| | || ||| | Sbjct 5789 GCCCGCGACCTCTTCCTGGCCCTGTGGATTCCGGACCTGTTCATGAAGCGCGTGGAGAAA 5730 Query 112143 AGTGGCAATTGGTCTCTCTTTTGTCCAGAC-AAGGCACCCGGTCTCTCCGATGCCGTGGG 112201 | ||| ||||| | ||| | || || || || || ||||| || |||| | || Sbjct 5729 AACGGCGATTGGACGCTCATGTGCCCCAACGAATGC-CCCGGCCTGGCCGACTGCTACGG 5671 Query 112202 TGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCG-GGCGACTGCGACGG 112260 ||| || ||||| || || ||| |||||||||| || | || ||| | ||||| Sbjct 5670 TGATGAATTTGAGGCTCTGTACGAAAAGTACGAGCGCGAGGGCCGTGGCCGCAA-GACGG 5612 Query 112261 TGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCA 112319 ||| ||| | || | | ||| | |||| || | | || || || || || | || Sbjct 5611 TGCGGGCT-CAGAAGCTCTGGTATTCTATCCTGGAAGCACAGACGGAAACGGGCAATCCC 5553 Query 112320 TATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATC 112379 | |||||| ||||| ||| ||| |||| ||||||||||||||||| |||| || Sbjct 5552 TTTATGCTGTACAAGGACCACTGCAACCGCAAGAGTAATCAAAAGAACCTGGGCACCATT 5493 Query 112380 AAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTG 112439 |||||| ||||| || || |||||| | || | | | || || || || Sbjct 5492 CGGAGTTCGAACCTTTGCACGGAAATCGTCGAGTACTCGGCACCTGACGAAGTCGCCGTC 5433 Query 112440 TGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAG-ACATTTGA 112498 || || || || ||| | || || || | ||| || | | ||| | | || Sbjct 5432 TGCAATCTGGCCTCACTAGCCCTGCCTGCCTTTGTCGA-CTATGAACAGGGCTGCTACGA 5374 Query 112499 TTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTATTGA 112558 | | || |||||||| || ||| | |||| ||||| || || | || || Sbjct 5373 CTTCCAGAAGCTCCACGAGGTGACGCAGGTTGTCGTCCGTAACCTCAATAGGATCATCGA 5314 Query 112559 TAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGG 112618 || |||||| ||||| || || || || ||| | ||||| || ||||| Sbjct 5313 CGTCAACCATTACCCAGTTGAAGAGGCCCGCAACAGCAACATGCGGCACCGGCCGATTGG 5254 Query 112619 TCTCGGTGTCCAAGGTCTCGCGGATG-TATTCATTCTTTGTCGCCACGCATTTGATTCCG 112677 | | |||||||| || || || |||| | ||| || | ||| | ||||| || Sbjct 5253 TGTGGGTGTCCAGGGCCTGGCCGATGCTTTTCTGGCTCT-CCGCATGCCGTTTGAGTCTC 5195 Query 112678 ACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGCTCTTGAG- 112736 || || ||| | || || || || || || || || |||||||| |||||| Sbjct 5194 CGGAGGCCCGGGAGCTAAACCAGCAAATCTTCGAAACCATCTACCACGCCGC-CTTGAGT 5136 Query 112737 GCGAGTTCGGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCT 112796 || |||| |||| || || || || || | ||| |||| || || || Sbjct 5135 GCCTCGATGGAGCTGGCCAAGAGCGAAGGGCCCTACTCGTCGTTTAAGGGATCGCCGGCG 5076 Query 112797 TCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACC----AAGCTTCACTACGA 112852 || | || ||||| || ||||| |||| ||||||||| || |||| || || Sbjct 5075 TCGGAGGGCGTGCTCCAGTTTGACATGT-GGAAGGTGAAGCCTTCAGAGCT---CTGGGA 5020 Query 112853 CTGGGACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGGC 112912 ||||| | || ||| | ||||||||| | || | || |||||||| || | || Sbjct 5019 GTGGGAAACGCTACGGGAGCAGATCAAGGAGCATGGCATACGCAACAGTCTGCTGGTAGC 4960 Query 112913 ACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTA 112972 || ||||| || ||| ||| | || ||| | || ||||| || ||||| || || || Sbjct 4959 CCCCATGCCGACGGCCAGCACGTCGCAGATCCTCGGCAATAACGAGTGCTTCGAGCCTTA 4900 Query 112973 CACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAAC 113027 |||| | ||||| || | | || | || ||||| ||||| | | |||||| Sbjct 4899 CACGTCCAACATTTACCAGCGACGCGTGCTGGCGGGCGAGTTCCAGGTGGTCAAC 4845 >seq780 Length=34333 Score = 86.0 bits (94), Expect = 8e-12 Identities = 156/226 (69%), Gaps = 2/226 (1%) Strand=Plus/Plus Query 102107 AACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGAT-ACAAAGT 102165 ||||||||| || |||| || ||||| || |||||||| ||| | | ||||| Sbjct 30417 AACAGTTCCTTGCATTCGCAAAAAAGCCGACTGGGCTATTCGCTGGATCCAGGACAAAAA 30476 Query 102166 CGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTG 102225 | ||| | |||||| | || | | || ||||| || ||||| ||||||||| || Sbjct 30477 CTCGT-CGTTTGCTCAACGCTTGGTAGCCTTTGCTGCGGTCGAGGGCATCTTCTTCAGTG 30535 Query 102226 GTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCT 102285 || |||| | | || | ||||||||||| || || || ||||| || | ||| | Sbjct 30536 GTGCCTTTGCCTCCATCTTCTGGCTCAAGAAACGTGGCCTAATGCCTGGCTTGACCTTTT 30595 Query 102286 CCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331 ||||||| || || || || || ||||| | ||| || ||||| Sbjct 30596 CCAACGAACTCATTTCGCGAGATGAGGGTTTGCACACGGATTTTGC 30641 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620733236290320