Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cerataphis_20brasiliensis_20yeast- like_20symbiont_20[genbank_20GCA_5F000372705.1_202013-04-22] 1,181 sequences; 25,465,455 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq598 174 3e-38 seq574 143 6e-29 seq1010 125 2e-23 >seq598 Length=71582 Score = 174 bits (192), Expect = 3e-38 Identities = 164/209 (78%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||| || | ||||||||||| ||||||||||| |||| ||||||| ||||| ||| Sbjct 1158 ACAAGATGCAACGTGGACTCTTTCTGAATATTGTAGTCGGACAGAGTTCGACCATCCTCG 1099 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 ||||||||||| || ||||| || || ||||| || || |||||||| || ||||| ||| Sbjct 1098 AGCTGCTTACCAGCAAAGATCAGGCGCTGTTGATCCGGGGGAATGCCCTCCTTGTCCTGA 1039 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || ||| ||| || || || |||||||| || ||| ||||| || || | |||||| Sbjct 1038 ATCTTTGACTTCACATTATCGATGGTGTCGGACGATTCGACTTCCAGAGTGATCGTCTTG 979 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || ||||| || || ||||| | |||||| Sbjct 978 CCAGTCAACGTCTTGACGAATATTTGCAT 950 Score = 161 bits (178), Expect = 2e-34 Identities = 161/209 (77%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 |||||||| | |||| ||||| ||||| || || ||| ||||| | |||||||| Sbjct 1614 ACAAGGTGCAAAGTGCTTTCTTTCTGAATGTTATAGTCGCTCAGAGTACGTCCATCTTCC 1555 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 || || || || || || || || || |||||||| |||||||||||||| |||||||| Sbjct 1554 AGTTGTTTTCCAGCAAATATGAGGCGCTGTTGGTCGGGAGGAATGCCTTCCTTGTCTTGT 1495 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 ||||| ||| ||||| ||||| || |||||| ||| ||||| | ||||| ||||||| Sbjct 1494 ATTTTCGACTTCACGTTGTCAATCGTATCCGAAGATTCAACTTCCAAGGTAATCGTCTTT 1435 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || |||| ||| || || || | |||||| Sbjct 1434 CCCGTCAGAGTCTTGACAAAGATTTGCAT 1406 Score = 134 bits (148), Expect = 3e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| | |||||||||||| || || ||||| || | || || | ||||| || Sbjct 1386 ACGAGGTGCAAAGTGGACTCTTTCTGGATGTTGTAGTCAGAGAGGGTCCGGCCATCCTCA 1327 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 || || || || ||||| || || || || ||||| ||||| ||||| || || || ||| Sbjct 1326 AGTTGTTTTCCAGCGAATATCAGGCGCTGCTGGTCAGGAGGGATGCCCTCCTTATCCTGA 1267 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||||||||| || |||||||| || ||| ||||| | |||| |||||| Sbjct 1266 ATCTTGGACTTGACGTTGTCGATGGTGTCGGACGATTCGACTTCCAACGTAATCGTCTTG 1207 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || || || || ||||| | |||||| Sbjct 1206 CCGGTTAATGTCTTGACGAAGATTTGCAT 1178 Score = 118 bits (130), Expect = 2e-21 Identities = 137/185 (74%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||| || || || |||||||| ||||||||||| |||| || || || ||||| || Sbjct 930 ACAAGATGTAGCGTTGACTCTTTCTGAATATTGTAGTCGGACAGGGTCCTGCCATCCTCC 871 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 | ||| || || || ||||| | ||||||||||| |||||||| || || ||||| || Sbjct 870 AACTGTTTTCCGGCAAAGATCAAGCGTTGTTGGTCGGGAGGAATACCCTCCTTGTCCTGG 811 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || |||||| || || || || || || || || ||||| || | |||||| Sbjct 810 ATCTTGGACTTGACATTATCGATAGTATCAGACGACTCTACCTCAAGAGTGATCGTCTTG 751 Query 195112 CCTGT 195116 || || Sbjct 750 CCAGT 746 >seq574 Length=30825 Score = 143 bits (158), Expect = 6e-29 Identities = 157/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| |||||| ||| || || || ||||| ||| | |||| ||||||||| Sbjct 26587 ACGAGGTGCAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCTCATGGTTCGGCCATCTTCG 26646 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| || || || ||||| || |||||||| || || || ||| Sbjct 26647 AGCTGCTTTCCGGCAAAGATGAGGCGCTGCTGGTCGGGGGGAATGCCCTCCTTATCCTGA 26706 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||||||||| || |||||||| ||| ||||| |||||||| | ||||| Sbjct 26707 ATCTTGGACTTGACGTTATCGATGGTGTCAGAAGACTCCACCTCAAGGGTGATTGTCTTC 26766 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | ||||| ||||| | ||||| Sbjct 26767 CCCGTGAGGGTTTTGACGAAGATCTGCAT 26795 >seq1010 Length=27177 Score = 125 bits (138), Expect = 2e-23 Identities = 135/179 (75%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 194953 TTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATA 195012 ||||| || |||||||||| || |||| || || || |||||||| || |||||||| Sbjct 25517 TTTTGGATGTTGTAATCGGACAGCGTTCGGCCGTCCTCAAGCTGCTTGCCGGCGAAGATC 25576 Query 195013 AGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCA 195072 ||||||||||| || ||||||||||| || || || ||||| || ||||| || || Sbjct 25577 AGTCGTTGTTGATCCGGAGGAATGCCCTCCTTATCCTGAATCTTGGATTTGACATTATCG 25636 Query 195073 ATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAA 195131 || |||||||| || || || ||||| | ||||| || || | || |||||||| Sbjct 25637 ATCGTGTCCGACGACTCGACCTCGAGGGTGATGGTCTTGCCCGTTAGGGTCTTTACGAA 25695 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109464811809827