Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cerataphis_20brasiliensis_20yeast-
like_20symbiont_20[genbank_20GCA_5F000372705.1_202013-04-22] 1,181 sequences; 25,465,455 total letters
Query= NC_016072.1
Length=1259197
Score E
Sequences producing significant alignments: (Bits) Value
seq1133 143 2e-28
seq598 93.3 3e-13
>seq1133
Length=6413
Score = 143 bits (158), Expect = 2e-28
Identities = 327/486 (67%), Gaps = 6/486 (1%)
Strand=Plus/Minus
Query 550054 TGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGA 550113
||| || ||||||||||||||||| ||| | |||||||| || | |||| | ||||| ||
Sbjct 5505 TGACATCATTGCCAATGATCAAGGCAACCGGACTACTCCCTCCTTTGTTGCCTTCACCGA 5446
Query 550114 AACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAATAC 550173
|| || | | | || ||||| || || |||||| || || ||| || ||
Sbjct 5445 CACAGAGCGCCTGATCGGCGATGCCGCGAAGAATCAAGTGGCTATGAACCCTCATAACAC 5386
Query 550174 TATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCAGA 550233
|||| ||||| || || || ||||| | | |||| || | |||||||| ||
Sbjct 5385 CGTTTTCGATGCGAAGCGATTGATTGGTCGCAAGTTTAGCGACGCTGAAGTTCAGGCCGA 5326
Query 550234 TATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAG-CTA 550292
|||||||||| ||||| ||||| | | | || || ||| || |||| | |
Sbjct 5325 CATGAAGCATTTCCCTTTTAAAATTATCGACAAAGCCGGCAAGCCTGTGATAGAAGTCGA 5266
Query 550293 CTCATGAAGGATCTGTTAAACAATTTT-CACCAGAACAAATTTCATCTATGGTTTTAATG 550351
| | |||| | || ||||| |||| || | ||||| || ||||| || |
Sbjct 5265 GT--TCAAGGGGGAGAAGAAAAATTTCACACCCGAGGAGATTTCTTCGATGGTGTTGACT 5208
Query 550352 AAAATGAAACAAACAGCC-AGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAAC 550410
|| ||| | || ||| || ||| | | ||| ||||| |||| || || ||
Sbjct 5207 AAGATGCGCGAGACCGCCGAGAGCTATC-TGGGTGGTACTGTTACCAATGCCGTCATCAC 5149
Query 550411 TGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGC 550470
||| || || || || |||||| ||||||||||| || || ||||| || | ||| ||
Sbjct 5148 TGTTCCTGCCTACTTCAATGACAGCCAACGTCAAGCCACCAAGGATGCCGGCCTTATCGC 5089
Query 550471 TGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGACT 550530
|| || |||||||| || || ||||| ||||| || || || || ||||||| || ||
Sbjct 5088 AGGTCTGAATGTTCTCCGCATCATCAACGAACCCACGGCGGCCGCTATTGCATACGGCCT 5029
Query 550531 TGATAA 550536
|| ||
Sbjct 5028 GGACAA 5023
>seq598
Length=71582
Score = 93.3 bits (102), Expect = 3e-13
Identities = 157/222 (71%), Gaps = 4/222 (2%)
Strand=Plus/Minus
Query 563256 GAGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCT-AGAGTTC 563314
||| || || ||||| || | || |||||||| ||| || || || ||| ||||| |
Sbjct 1624 GAGGCGCAGCACAAGGTGCAAAGTGCTTTCTTTCTGAATGTTATAGTC-GCTCAGAGTAC 1566
Query 563315 TTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTT 563374
| |||||| ||||||||||| ||||| || || | || || || |||||||| ||||
Sbjct 1565 GTCCATCTTCCAGTTGTTTTCCAGCAAATATGAGGCGCTGTTGGTCGGGAGGAATGCCTT 1506
Query 563375 CTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGT-ACATTCGAGA 563433
| || ||||| ||||| || || ||||| ||||| | || | | ||| |
Sbjct 1505 CCTTGTCTTGTATTTTCGACTTCACGTTGTCAATCGTATCCG-AAGATTCAACTTCCAAG 1447
Query 563434 GTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475
|||| || || || || ||||| || || || |||||||||
Sbjct 1446 GTAATCGTCTTTCCCGTCAGAGTCTTGACAAAGATTTGCATA 1405
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 4029233543393690
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |