Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cerataphis_20brasiliensis_20yeast- like_20symbiont_20[genbank_20GCA_5F000372705.1_202013-04-22] 1,181 sequences; 25,465,455 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq1133 143 2e-28 seq598 93.3 3e-13 >seq1133 Length=6413 Score = 143 bits (158), Expect = 2e-28 Identities = 327/486 (67%), Gaps = 6/486 (1%) Strand=Plus/Minus Query 550054 TGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGA 550113 ||| || ||||||||||||||||| ||| | |||||||| || | |||| | ||||| || Sbjct 5505 TGACATCATTGCCAATGATCAAGGCAACCGGACTACTCCCTCCTTTGTTGCCTTCACCGA 5446 Query 550114 AACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAATAC 550173 || || | | | || ||||| || || |||||| || || ||| || || Sbjct 5445 CACAGAGCGCCTGATCGGCGATGCCGCGAAGAATCAAGTGGCTATGAACCCTCATAACAC 5386 Query 550174 TATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCAGA 550233 |||| ||||| || || || ||||| | | |||| || | |||||||| || Sbjct 5385 CGTTTTCGATGCGAAGCGATTGATTGGTCGCAAGTTTAGCGACGCTGAAGTTCAGGCCGA 5326 Query 550234 TATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAG-CTA 550292 |||||||||| ||||| ||||| | | | || || ||| || |||| | | Sbjct 5325 CATGAAGCATTTCCCTTTTAAAATTATCGACAAAGCCGGCAAGCCTGTGATAGAAGTCGA 5266 Query 550293 CTCATGAAGGATCTGTTAAACAATTTT-CACCAGAACAAATTTCATCTATGGTTTTAATG 550351 | | |||| | || ||||| |||| || | ||||| || ||||| || | Sbjct 5265 GT--TCAAGGGGGAGAAGAAAAATTTCACACCCGAGGAGATTTCTTCGATGGTGTTGACT 5208 Query 550352 AAAATGAAACAAACAGCC-AGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAAC 550410 || ||| | || ||| || ||| | | ||| ||||| |||| || || || Sbjct 5207 AAGATGCGCGAGACCGCCGAGAGCTATC-TGGGTGGTACTGTTACCAATGCCGTCATCAC 5149 Query 550411 TGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGC 550470 ||| || || || || |||||| ||||||||||| || || ||||| || | ||| || Sbjct 5148 TGTTCCTGCCTACTTCAATGACAGCCAACGTCAAGCCACCAAGGATGCCGGCCTTATCGC 5089 Query 550471 TGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGACT 550530 || || |||||||| || || ||||| ||||| || || || || ||||||| || || Sbjct 5088 AGGTCTGAATGTTCTCCGCATCATCAACGAACCCACGGCGGCCGCTATTGCATACGGCCT 5029 Query 550531 TGATAA 550536 || || Sbjct 5028 GGACAA 5023 >seq598 Length=71582 Score = 93.3 bits (102), Expect = 3e-13 Identities = 157/222 (71%), Gaps = 4/222 (2%) Strand=Plus/Minus Query 563256 GAGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCT-AGAGTTC 563314 ||| || || ||||| || | || |||||||| ||| || || || ||| ||||| | Sbjct 1624 GAGGCGCAGCACAAGGTGCAAAGTGCTTTCTTTCTGAATGTTATAGTC-GCTCAGAGTAC 1566 Query 563315 TTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTT 563374 | |||||| ||||||||||| ||||| || || | || || || |||||||| |||| Sbjct 1565 GTCCATCTTCCAGTTGTTTTCCAGCAAATATGAGGCGCTGTTGGTCGGGAGGAATGCCTT 1506 Query 563375 CTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGT-ACATTCGAGA 563433 | || ||||| ||||| || || ||||| ||||| | || | | ||| | Sbjct 1505 CCTTGTCTTGTATTTTCGACTTCACGTTGTCAATCGTATCCG-AAGATTCAACTTCCAAG 1447 Query 563434 GTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475 |||| || || || || ||||| || || || ||||||||| Sbjct 1446 GTAATCGTCTTTCCCGTCAGAGTCTTGACAAAGATTTGCATA 1405 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029233543393690