Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cerataphis_20brasiliensis_20yeast- like_20symbiont_20[genbank_20GCA_5F000372705.1_202013-04-22] 1,181 sequences; 25,465,455 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq677 297 4e-75 seq780 132 9e-26 >seq677 Length=7370 Score = 297 bits (328), Expect = 4e-75 Identities = 816/1233 (66%), Gaps = 37/1233 (3%) Strand=Plus/Plus Query 221418 TCAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGGCCTCGGGAG 221477 ||| ||| |||||||||||||| || ||||| || ||| || | |||||| |||| Sbjct 5138 TCAAGGCGGCGTGGTAGATGGTTTCGAAGATTTGCTGGTTTAGCTCCCGGGCCTCCGGAG 5197 Query 221478 AAGTGAAGGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCGA 221537 | || ||||| || || | |||| | |||||||| ||||| || || | ||| | Sbjct 5198 ACTCAAACGGCATGCGGAGAGCCAGAAAAGCATCGGCCAGGCCCTGGACACCCACACCAA 5257 Query 221538 TGGGCCTGTGTCTCCTGTTG--GAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGACGTC 221595 | |||| ||| | | ||||| | |||| || ||| || || ||| ||||||||| Sbjct 5258 TCGGCCGGTGCCGCATGTTGCTGTTGCGG--GCCTCTTCAACTGGGTAATGGTTGACGTC 5315 Query 221596 GATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGATT 221655 ||| | | |||||||| | || || | ||||||| ||||||||| | Sbjct 5316 GATGATCCTATTGAGGTTACGGACGACAACCTGCGTCACCTCGTGGAGCTTCTGGAAGTC 5375 Query 221656 GAACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCTGGC 221715 | | || ||| | || | | || ||||| || ||||| | ||| Sbjct 5376 GTA---------GCAGCCCT-GTTCATAG--TCGACAAAGGCAGGCAGGGCTAGTGAGGC 5423 Query 221716 CAGGTTACACACGGCCACCTCGTCCTTGTTG--GTATACTGTATGATCTCTGTACAGAGG 221773 ||| || || ||||| || ||||| | || | |||| | ||| || || || ||| Sbjct 5424 CAGATTGCAGACGGCGACTTCGTCA--GGTGCCGAGTACTCGACGATTTCCGTGCAAAGG 5481 Query 221774 TTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCG-TCCTT 221832 || | | ||||| ||||||| || |||||| |||||| ||| ||| | ||||| Sbjct 5482 TTCGAACTCCGAATGGTGCCCAGGTTCTTTTGATTACTCTTGCGGTTG-CAGTGGTCCTT 5540 Query 221833 GTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTC 221892 ||| |||||||||||| ||| || ||| ||| || |||| || | |||||| | Sbjct 5541 GTACAGCATAAAGGGATTGCCCGTTTCCGTCTGTGCTTCCAGGATAGAATACCAGAGCT- 5599 Query 221893 TCTG-GCGCTCACCGTCCTCTTGACTGCACCCTCGGTCTTTTCATACCCGGTATAGAGCA 221951 |||| || | ||||||| | | | |||||| || | | || || ||||| Sbjct 5600 TCTGAGCCCGCACCGTCTTGCGGCCACGGCCCTCGCGCTCGTACTTTTCG-TACAGAGCC 5658 Query 221952 TGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAGAC 222011 | |||| | |||||||| ||| ||||||| || || | ||| ||||| || Sbjct 5659 T--CAAATTCATCACCGTAGCAGTCGGCCAGGCCGGGGCATTCGTTGGGGCACATGAGCG 5716 Query 222012 TCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAA 222071 |||| | ||| | | || | || |||||| |||||||| |||||||| ||| | | Sbjct 5717 TCCAATCGCCGTTTTTCTCCACGCGCTTCATGAACAGGTCCGGAATCCACAGGGCCAGGA 5776 Query 222072 AGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAA 222131 |||| || | || ||| ||||||| ||| | ||| || | |||||||| |||||||| Sbjct 5777 AGAGGTCGCGGGCCCGAACCTCCTCCTTGCCATGGTTCTTGCGCAGATCCAGAAACTCAA 5836 Query 222132 AAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCAC 222191 | | || |||||||||||||||| || | ||| | || || || ||||||||||| | Sbjct 5837 ACACATCGGCGTGCCACGGCTCCAAGTATATGGCAAAGGCACCTGGCCGCTTGTTGCCGC 5896 Query 222192 CCTGATCCACCATCCTCTCCAGAGCGTTGAAGATGCGAAGGGTCGGTACCAGTCCGTTGG 222251 |||| || || | || | |||||||| ||||| | || | | ||||| | Sbjct 5897 CCTGGTCGACGTAGCGGGCCGTATTGTTGAAGACACGAAGCATGGGAATGACACCGTTCG 5956 Query 222252 ATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCA--GGTTACTGGCAGACAT 222309 | ||||||||||| |||||| | |||| || | | | | | | | | Sbjct 5957 AAGTCCCGTTGGTGCCGGCAATGTAAGAACCGGTAGCACGGATCCGATGCACGTTG--AG 6014 Query 222310 GCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGATGCC 222369 ||||| || ||||| || |||||||||||||| ||||||| ||||| |||||| Sbjct 6015 CCCGATGCCGCCGGCCATCTTGGAGATCATGGCGCATGTCTTGAGCGTGTCGTAGATGCC 6074 Query 222370 CTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATTTGGTGGA 222429 ||| || ||||||||| | || | || || || ||||| | |||| | | | | Sbjct 6075 CTCGATGCTGTCCTCCTTCATGTCAACGAGGAAGCACGACGAAAGCTGACACTGAGGCGT 6134 Query 222430 ACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCAGATCGTA 222489 | |||||| |||||||| || || || || ||| | || ||||| || | ||| Sbjct 6135 GCCGGCGTTGAACAGCGTCGGCGACGCATGGGTGAAGAACTTGCTGGACATGAGGTTGTA 6194 Query 222490 CGTCTCTACGACTCTGGCGATGTTGTCCCCGTGAATCTGCATGGCGCATCTCATGTACAT 222549 |||||| | ||||| | |||| ||| | || || || ||| | |||| ||| Sbjct 6195 CGTCTCGAGGACTCGGTCGATATTGCCGCCCCATATACCCACGGCAACGCGCATGATCAT 6254 Query 222550 GTACTGGGGCCTCTCCACAGGAC---CCTTGGAGCTGGAGAGCAGGTACGATTTTTCCAG 222606 || || || | ||| || | | || | ||||| ||||| || || |||||| Sbjct 6255 GTGTTGAGGGCGCTCAAC-GATCTTGCCGTCGAGCT--TGAGCAAATAAGAACGTTCCAG 6311 Query 222607 AGTCTTGAACCCAAAGTAGTTGAGGTCAAAGTC 222639 |||||||| ||||| || | | || |||||| Sbjct 6312 TGTCTTGAAGCCAAAATACTGGTAGTTAAAGTC 6344 Score = 123 bits (136), Expect = 5e-23 Identities = 139/186 (75%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 221065 CATCTCGTCCGTCCATAGACCCCTCTCTTCCAGCACCTTGACCATGTGCTTGTTCACCAC 221124 |||| ||||| ||||| ||| || |||| |||||| || ||| ||||| Sbjct 4794 CATCGAGTCCGACCATAAGCCCAAGTCAACCAGGTCCTTGAGCAGCCAGGGGTTGACCAC 4853 Query 221125 TTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGGTTCGATGCT 221184 ||||| || |||| ||||| | | |||||| | ||| || ||| | || |||| || Sbjct 4854 CTGGAACTCGCCCGCCAGCACGCGTCGCTGGTAAATGTTGGACGTGTAAGGCTCGAAGCA 4913 Query 221185 CTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCACCAGCAGACT 221244 |||||| ||||| |||||||| | ||||||||| || |||||||| || ||||||||||| Sbjct 4914 CTCGTTATTGCCGAGGATCTGCGACGTGCTGGCCGTCGGCATGGGGGCTACCAGCAGACT 4973 Query 221245 GTTGCG 221250 |||||| Sbjct 4974 GTTGCG 4979 >seq780 Length=34333 Score = 132 bits (146), Expect = 9e-26 Identities = 296/446 (66%), Gaps = 17/446 (4%) Strand=Plus/Plus Query 25883 TGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCT 25942 |||||||||||||||| || ||||||||||| ||||| ||| | ||||| ||||||||| Sbjct 30497 TGGTAGCCTTTGCTGCGGTCGAGGGCATCTTCTTCAGTGGTGCCTTTGCCTCCATCTTCT 30556 Query 25943 GGCTCAAGCAGAAGGGGAC-CATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGG 26001 |||||||| | | | || | ||||| || || |||||||||||| ||||| | Sbjct 30557 GGCTCAAG-AAACGTGGCCTAATGCCTGGCTTGACCTTTTCCAACGAACTCATTTCGCGA 30615 Query 26002 GACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAA 26061 || |||||| | |||| ||||||||||| || || || || ||||| || ||| Sbjct 30616 GATGAGGGTTTGCACACGGATTTTGCCTGTCTCCTACACTCG---CACTT----CAAAAA 30668 Query 26062 CCTTCTC----AAGAGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGA 26117 || | || || | || | ||||||| || || || ||||| | || Sbjct 30669 CCGGGCCAGCAAACAGGTCATCCATGACATCATCACCGATGCCGTCACCATCGAACAAGA 30728 Query 26118 GTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCA 26177 |||| | ||||||||| || | |||| || Sbjct 30729 ATTTCTCACCGAAGCCCTGCCCTGCGCATTACTCGGCATGAACGCCACCTTGATGAAGCA 30788 Query 26178 ATACATTGAGTATGTGGCCGACCATCTGCT-GT-GCCAGCTGGGACTCGCCAGACTCTAC 26235 || || |||| || ||||||| || || || ||| ||||| || | | ||| Sbjct 30789 GTATATCGAGTTCGTTGCCGACCGCCTTCTAGTCGCC--CTGGGCAACGAAAAGGTGTAC 30846 Query 26236 AGTACGCCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTC 26295 || || | ||||| || || || ||||||||||||||| | | || ||||||||||| Sbjct 30847 AGGTCGTCGAACCCCTTTGATTTCATGGAAAACATATCGCTAGGGGGCAAGACCAACTTT 30906 Query 26296 TTTGAAAAGAGGGTCGGCGACTATCA 26321 |||||||| ||||||| ||||| || Sbjct 30907 TTTGAAAAACGGGTCGGTGACTACCA 30932 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928831087928640