Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cerataphis_20brasiliensis_20yeast-
like_20symbiont_20[genbank_20GCA_5F000372705.1_202013-04-22] 1,181 sequences; 25,465,455 total letters
Query= NC_021246.1
Length=281182
Score E
Sequences producing significant alignments: (Bits) Value
seq598 120 5e-22
>seq598
Length=71582
Score = 120 bits (132), Expect = 5e-22
Identities = 168/236 (71%), Gaps = 0/236 (0%)
Strand=Plus/Minus
Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184
|||| ||||| || | ||| ||||| || |||||||| || | |||||| ||||||
Sbjct 1185 ATTTGCATACCGCCGCGCAAACGAAGGACAAGATGCAACGTGGACTCTTTCTGAATATTG 1126
Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244
|||||||| | |||| | ||| || | || || || ||||| || | | |||||||
Sbjct 1125 TAGTCGGACAGAGTTCGACCATCCTCGAGCTGCTTACCAGCAAAGATCAGGCGCTGTTGA 1066
Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304
|| || || || || || || || || || || | || | ||| || || |||||
Sbjct 1065 TCCGGGGGAATGCCCTCCTTGTCCTGAATCTTTGACTTCACATTATCGATGGTGTCGGAC 1006
Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
|| || ||||| ||||| || || || || || | ||| || || |||||||||||
Sbjct 1005 GATTCGACTTCCAGAGTGATCGTCTTGCCAGTCAACGTCTTGACGAATATTTGCAT 950
Score = 116 bits (128), Expect = 7e-21
Identities = 153/212 (72%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184
|||| |||||||| | ||| ||||| || ||||| | || | |||||| ||||||
Sbjct 957 ATTTGCATACCACCGCGCAAGCGAAGGACAAGATGTAGCGTTGACTCTTTCTGAATATTG 898
Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244
|||||||| | || || ||| || || |||||||||||||| || || | |||||
Sbjct 897 TAGTCGGACAGGGTCCTGCCATCCTCCAACTGTTTTCCGGCAAAGATCAAGCGTTGTTGG 838
Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304
|| ||||| || || || || || || || |||| || | ||| |||||||| ||
Sbjct 837 TCGGGAGGAATACCCTCCTTGTCCTGGATCTTGGACTTGACATTATCGATAGTATCAGAC 778
Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGT 193336
||||| || || ||||| || || || || ||
Sbjct 777 GACTCTACCTCAAGAGTGATCGTCTTGCCAGT 746
Score = 105 bits (116), Expect = 1e-17
Identities = 155/219 (71%), Gaps = 8/219 (4%)
Strand=Plus/Minus
Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG----GATAACGTTCT 193201
|| || || || ||||| || ||||| ||| ||||||||| || |||| |
Sbjct 1620 CGCAGCACAAGGTGCAAAGTGCTTTCTTTCTGAATGTTATAGTCGCTCAGAGTACGTCC- 1562
Query 193202 AGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTC 193261
||| || | ||||||||| ||||| || | | |||||| || ||||| || |||||
Sbjct 1561 ---ATCTTCCAGTTGTTTTCCAGCAAATATGAGGCGCTGTTGGTCGGGAGGAATGCCTTC 1505
Query 193262 TTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGT 193321
|| ||||||||||| | || | || ||| ||||| ||||| |||||||| | ||
Sbjct 1504 CTTGTCTTGTATTTTCGACTTCACGTTGTCAATCGTATCCGAAGATTCAACTTCCAAGGT 1445
Query 193322 TATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
|| || || || || || || || ||||| ||||||||
Sbjct 1444 AATCGTCTTTCCCGTCAGAGTCTTGACAAAGATTTGCAT 1406
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 899641118851920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |