Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cerataphis_20brasiliensis_20yeast- like_20symbiont_20[genbank_20GCA_5F000372705.1_202013-04-22] 1,181 sequences; 25,465,455 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq598 120 5e-22 >seq598 Length=71582 Score = 120 bits (132), Expect = 5e-22 Identities = 168/236 (71%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| ||||| || | ||| ||||| || |||||||| || | |||||| |||||| Sbjct 1185 ATTTGCATACCGCCGCGCAAACGAAGGACAAGATGCAACGTGGACTCTTTCTGAATATTG 1126 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 |||||||| | |||| | ||| || | || || || ||||| || | | ||||||| Sbjct 1125 TAGTCGGACAGAGTTCGACCATCCTCGAGCTGCTTACCAGCAAAGATCAGGCGCTGTTGA 1066 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || || || || || || || || || || || | || | ||| || || ||||| Sbjct 1065 TCCGGGGGAATGCCCTCCTTGTCCTGAATCTTTGACTTCACATTATCGATGGTGTCGGAC 1006 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || ||||| ||||| || || || || || | ||| || || ||||||||||| Sbjct 1005 GATTCGACTTCCAGAGTGATCGTCTTGCCAGTCAACGTCTTGACGAATATTTGCAT 950 Score = 116 bits (128), Expect = 7e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| |||||||| | ||| ||||| || ||||| | || | |||||| |||||| Sbjct 957 ATTTGCATACCACCGCGCAAGCGAAGGACAAGATGTAGCGTTGACTCTTTCTGAATATTG 898 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 |||||||| | || || ||| || || |||||||||||||| || || | ||||| Sbjct 897 TAGTCGGACAGGGTCCTGCCATCCTCCAACTGTTTTCCGGCAAAGATCAAGCGTTGTTGG 838 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || ||||| || || || || || || || |||| || | ||| |||||||| || Sbjct 837 TCGGGAGGAATACCCTCCTTGTCCTGGATCTTGGACTTGACATTATCGATAGTATCAGAC 778 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGT 193336 ||||| || || ||||| || || || || || Sbjct 777 GACTCTACCTCAAGAGTGATCGTCTTGCCAGT 746 Score = 105 bits (116), Expect = 1e-17 Identities = 155/219 (71%), Gaps = 8/219 (4%) Strand=Plus/Minus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG----GATAACGTTCT 193201 || || || || ||||| || ||||| ||| ||||||||| || |||| | Sbjct 1620 CGCAGCACAAGGTGCAAAGTGCTTTCTTTCTGAATGTTATAGTCGCTCAGAGTACGTCC- 1562 Query 193202 AGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTC 193261 ||| || | ||||||||| ||||| || | | |||||| || ||||| || ||||| Sbjct 1561 ---ATCTTCCAGTTGTTTTCCAGCAAATATGAGGCGCTGTTGGTCGGGAGGAATGCCTTC 1505 Query 193262 TTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGT 193321 || ||||||||||| | || | || ||| ||||| ||||| |||||||| | || Sbjct 1504 CTTGTCTTGTATTTTCGACTTCACGTTGTCAATCGTATCCGAAGATTCAACTTCCAAGGT 1445 Query 193322 TATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || || || || || ||||| |||||||| Sbjct 1444 AATCGTCTTTCCCGTCAGAGTCTTGACAAAGATTTGCAT 1406 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899641118851920