Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cerataphis_20brasiliensis_20yeast- like_20symbiont_20[genbank_20GCA_5F000372705.1_202013-04-22] 1,181 sequences; 25,465,455 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq677 210 3e-48 seq854 145 9e-29 seq475 100 3e-15 seq425 98.7 1e-14 seq1050 96.9 4e-14 seq780 95.1 1e-13 seq113 89.7 6e-12 seq568 87.8 2e-11 >seq677 Length=7370 Score = 210 bits (232), Expect = 3e-48 Identities = 344/493 (70%), Gaps = 17/493 (3%) Strand=Plus/Plus Query 1630062 GCACTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTT 1630121 || ||||||||||||||| ||||| | ||| ||||| || |||||||| | || ||||| Sbjct 5895 GCCCTGGTCGACGTAGCGGGCCGTATTGTTGAAGACACGAAGCATGGGAATGACACCGTT 5954 Query 1630122 GGACTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAA 1630181 || ||||||||||| || | ||| | |||| || || | | ||| || | Sbjct 5955 CGAAGTCCCGTTGGTGCCGGCAATGTAAGAACCGGTAGCACGGATCCGATGCACGTTGAG 6014 Query 1630182 GCCGATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGT-TTGAGCGTGTCGTAGATGC 1630240 ||||||||||||||| ||||||||| | ||||| ||| ||||||||||||||||||| Sbjct 6015 CCCGATGCCGCCGGCCATCTTGGAGATCATGGCGCA-TGTCTTGAGCGTGTCGTAGATGC 6073 Query 1630241 CCTCGATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCG 1630300 ||||||| ||| |||||||||| ||||| ||||||||||| || || | || Sbjct 6074 CCTCGATGCTGTCCTCCTTCATGTCAACGAGGAAGCACGACGAAAGCTGACACTGAGGCG 6133 Query 1630301 TGCCGGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGT 1630360 ||||||||||||| ||||| |||| ||| |||||| |||| | |||||| || || Sbjct 6134 TGCCGGCGTTGAACAGCGTCGGCGACGCATGGGTGAAGAACTTGCTGGACATGAGGTTGT 6193 Query 1630361 AGGTGGCGAGCACGCGCGCCAGCGCATCGTCCACGTCGGCAAACCCATAGTGGCCGATGG 1630420 | || |||| || || ||| | | || |||||| || | || Sbjct 6194 ACGTCTCGAGGACTCG------------GTCGATAT-TGCCGCCCCATA--TACCCACGG 6238 Query 1630421 CGACGCGCATGAGCATGTACTGGGGCCGCTCGACGACGACGCCGCGCACCTTGGTCAGGT 1630480 | |||||||||| ||||| || || ||||| |||| |||| | |||| || | Sbjct 6239 CAACGCGCATGATCATGTGTTGAGGGCGCTCAACGATCTTGCCGTCGAGCTTGAGCAAAT 6298 Query 1630481 AGGACCGGCGCATGGTCATGAGGCCAAAGTAGGAAAAGGCAAAATCGCGGTCGTGGCGGA 1630540 | || || || ||| ||| |||||| || || ||| || ||||| | | || Sbjct 6299 AAGAACGTTCCAGTGTCTTGAAGCCAAAATACTGGTAGTTAAAGTCCCGGTCATAGATGA 6358 Query 1630541 TGGCGGCGTCGAG 1630553 |||| | |||||| Sbjct 6359 TGGCCGAGTCGAG 6371 Score = 107 bits (118), Expect = 2e-17 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 1628374 CCGTAGCACTCGTGCAGGCCGGGCGCCTCGGACGGACAAAAGAGCGACCAGTCGCCACCG 1628433 |||||||| ||| ||||||||| ||| || || | ||||| ||| ||||| Sbjct 5671 CCGTAGCAGTCGGCCAGGCCGGGGCATTCGTTGGGGCACATGAGCGTCCAATCGCCGTTT 5730 Query 1628434 GTCACCGCGCGGCGCATAAAGAGGTCACACGTCCACAGTGCGTAAAAGAGGTCGCGCGCC 1628493 || || |||| ||| || ||||| ||||||| || ||||||||||| ||| Sbjct 5731 TTCTCCACGCGCTTCATGAACAGGTCCGGAATCCACAGGGCCAGGAAGAGGTCGCGGGCC 5790 Query 1628494 CGGTTCTCCTCCTTGCCGTGGTTCTTTTTGAGGTCGAGCCAGTCGACAATGTCGGCGTGC 1628553 || |||||||||||| |||||||| || || || | || | | ||||||||| Sbjct 5791 CGAACCTCCTCCTTGCCATGGTTCTTGCGCAGATCCAGAAACTCAAACACATCGGCGTGC 5850 Query 1628554 CACGGCTCCAGGTAGCAGGCAAAGGCGCCCTTGCGCTTGCCGCCGCC 1628600 |||||||||| ||| ||||||||| || |||||| |||||| Sbjct 5851 CACGGCTCCAAGTATATGGCAAAGGCACCTGGCCGCTTGTTGCCGCC 5897 Score = 98.7 bits (108), Expect = 1e-14 Identities = 145/203 (71%), Gaps = 2/203 (1%) Strand=Plus/Plus Query 1627314 CAGGCGCTTGACCAGGTGGCGGTTGACCACGGTAAAGTCGCCCGAGAGCACGCGGCGCGT 1627373 |||| ||||| ||| | |||||||||| || ||||||| |||||||| ||| Sbjct 4824 CAGGTCCTTGAGCAGCCAGGGGTTGACCACCTGGAACTCGCCCGCCAGCACGCGTCGCTG 4883 Query 1627374 GTAGATGTTGTTGGTGATGACCTCGCACGCCTCGGTGTTGCCCAGGATCTGCGACGTCGT 1627433 ||| |||||| ||| |||| | |||| | ||||| |||||||||||||| | Sbjct 4884 GTAAATGTTGGACGTGTAAGGCTCGAAGCACTCGTTATTGCCGAGGATCTGCGACGTGCT 4943 Query 1627434 GGCCGTGGGCATGAGCGCCACGAGGAGCGAGTTGCGCAGGCCGTGCT-GTCGAACTAGCG 1627492 |||||| |||||| | || || || || |||||| | ||| |||| | || || || Sbjct 4944 GGCCGTCGGCATGGGGGCTACCAGCAGACTGTTGCGTATGCCATGCTCCTTGATCT-GCT 5002 Query 1627493 CGCGCAGCGCGTCCCAGTCCCAG 1627515 | || |||| ||||| |||||| Sbjct 5003 CCCGTAGCGTTTCCCACTCCCAG 5025 >seq854 Length=13224 Score = 145 bits (160), Expect = 9e-29 Identities = 269/395 (68%), Gaps = 6/395 (2%) Strand=Plus/Plus Query 18100 GGCGAGTCGCACGGGGCGGGCGTCGGCTGCATCATCGACGGCGTGCCGCCGTGCATGCCA 18159 |||||||||||||| ||| ||||||||||| | ||||| || | | Sbjct 7478 GGCGAGTCGCACGGCAAATCAGTCTCGTGCATCATCGAAAACTGCCCGCCCGGCCTCGCC 7537 Query 18160 CTGGCCGAGGCCGACATCCAGCCTCAGTTGGATCGGCGCCGACCGGGCCAGGGCGCACTT 18219 || ||||| |||||||||| |||||| | |||| || || || |||||| || | Sbjct 7538 CTCGCCGAATCCGACATCCAACCTCAGCTCAATCGTCGTCGGCCTGGCCAGTCAGCCATC 7597 Query 18220 TCCACGCCGCGCAACGAGCCCGATCGCGTCATCATCCAGTCGGGCACGGAGAACGGCCTC 18279 ||||||||||| | || |||||||||| |||||| ||| ||| ||||| | Sbjct 7598 ACCACGCCGCGCGATGAAAAGGATCGCGTCACCATCCACAGCGGCGTCGAGGCCGGCCGC 7657 Query 18280 ACGCTCGGCTCGCCCGTCGGCCTCTTTGTGGCCAACCGCGACCAGCGGCCCGTCGACTAT 18339 || |||||| |||| || ||| || ||||| ||||| || ||| ||||| Sbjct 7658 ACCCTCGGCACGCCAATCCTGCTCACCGTCCCCAACGAGGACCATCGCCCCCGTGACTAC 7717 Query 18340 TCCGACATGTGCAAGGTGC------CGCGGCCCTCACACGCCGACTACACCTACATGGCC 18393 ||| | || | | | |||||| |||||||||| ||||| | | Sbjct 7718 GGCGATGCGACCATTGACCTTTACCCTCGGCCCAGCCACGCCGACTGGACCTATCTCGAA 7777 Query 18394 AAGTACGGCATCAAGGCGTCGTCGGGCGGAGGCCGGTCGTCTGCCCGCGAGACCCTCATG 18453 || |||||||||||||| || || ||||| ||||| || || ||||||||| | Sbjct 7778 AAATACGGCATCAAGGCCTCCTCTGGCGGTGGCCGCAGCTCAGCGCGCGAGACCATTGCC 7837 Query 18454 CGCGTCGCCGCCGGCGCGGTCGCCGAGAAATGGCT 18488 ||||| ||||||||||| |||||||| || ||||| Sbjct 7838 CGCGTAGCCGCCGGCGCCGTCGCCGAAAAGTGGCT 7872 >seq475 Length=99312 Score = 100 bits (110), Expect = 3e-15 Identities = 85/105 (81%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 1592190 CCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAACATGA 1592249 ||||||| || || |||||| | | || || ||||||||||| | || |||||||||| Sbjct 72792 CCAACTATCTTGATATCAAGTCCTTACTTGACGTTGGGTGCAAGACCGTTGCCAACATGA 72733 Query 1592250 TCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCA 1592294 ||||||||||||| || || ||||| || ||||| || ||||||| Sbjct 72732 TCAAGGGCAAGTCTCCGGAAGAGATTCGAAAGACGTTCAACATCA 72688 >seq425 Length=61341 Score = 98.7 bits (108), Expect = 1e-14 Identities = 312/466 (67%), Gaps = 16/466 (3%) Strand=Plus/Minus Query 1726694 GCGGCGGCGCGCACGGCGTCGAGTGCCGTCGCCACG-CTCCCGTCGGTGCCGTTCTTGAA 1726752 |||||||||| | || || | || | | ||| | |||||||| ||||| ||||| || Sbjct 16000 GCGGCGGCGCCGATAGCATCAA-TGGCAACACCAAGACTCCCGTCTGTGCCATTCTTAAA 15942 Query 1726753 GCCGATGGCCAGCGGCAGTGCCGACGCCATCTCGCGGTGCACCTGGCTCTCGGTCGTGCG 1726812 ||||| | | | ||| | || || | |||||| |||| ||| |||||| || || Sbjct 15941 GCCGACCGGGAAGGACAGGCCGGAAGCGAGCTCGCGATGCAGTTGGGACTCGGTGGTTCG 15882 Query 1726813 CGCGCCCACGGCGCCCCACGCCACCAGGTCTGCCA--AATAAGGGGCCACCAGAGGACTG 1726870 || || | |||||| | | ||| |||| ||| | ||| | | | | | Sbjct 15881 GGCTCCAATGGCGCCGACGGAGATGCAGTCAGCCAGGAATT-GAGGCGATATGGTGTC-G 15824 Query 1726871 AGAAACTCGACGGCCACGGGCTGAT-CGACGGCGACGACGAGATCGCGCAACAGGCGGCG 1726929 || | |||| ||| | |||| || | || ||| | ||| ||| |||| |||||| Sbjct 15823 AGCATCTCGCTGGCAATGGGC--ATGCCACT-CGAAGT-GAGGTCGACAAACATGCGGCG 15768 Query 1726930 CGACGCCGTCAGGCCGTCGGCCAGGCGGCACGACCCGTCGAGGTCGGGGTCGCTGGCCAG 1726989 || || ||| ||| | | | || | ||| ||| | ||| || ||| || ||| Sbjct 15767 GGAGACCCTCAAGCCCTTGTTGATCTGGAAGGACAGGTCCATGTCTGGATCGTTGATCAG 15708 Query 1726990 GCCCTTCCACCCGACGGTCGTGCGCGGCTTTTCGACATAGGCGCGCATGACCACGCAAAG 1727049 ||||||||| || | |||||||||||||| |||| ||||||||||||||| | ||| || Sbjct 15707 GCCCTTCCAGCCAATTGTCGTGCGCGGCTTCTCGAGATAGGCGCGCATGACGATGCATAG 15648 Query 1727050 CGCGTCGCCGACCTCGTCTCGGACAAAGGCGCGCAGGC-GTCGGCCATAGTCGACGACGG 1727108 ||| || | | ||| || ||||| || || || | ||||| | || ||| | | | Sbjct 15647 GTCGTTGCACAGC-CGT-TCTGACAAGTGC-CGAAGTCGGTCGG-CGTACTCGCGGGCAG 15592 Query 1727109 CCGCCGGGTCGTGCGCCGAACACGGACCAACGATAACCAGCAGCCG 1727154 | | || ||||| || || || || |||| ||| || ||||| Sbjct 15591 CATCGGGATCGTGAATGGAGCAGGGGCCGACGACAACAAGAAGCCG 15546 >seq1050 Length=13000 Score = 96.9 bits (106), Expect = 4e-14 Identities = 145/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||||| |||||| ||| | || || |||||||||||||| || || || | Sbjct 9767 GCTTGGCCAACTCGCCGGGCAACAGAAGACGGACGGCGGTCTGGATTTCCCGACTGGTAA 9708 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || |||||||| |||| |||||||||| | |||| | ||||||| |||| | Sbjct 9707 TGGTAGAACGCTTGTTGTAGTGGGCCAGACGGCTAGATTCGGCGGCGATGCGTTCGAAAA 9648 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| || |||||||| ||| | ||| || | || ||||| | Sbjct 9647 TGTCGTTGACGAAGCTGTTCATGATGCTCATGGCCTTCGACGACACTCCGGTATCGGGAT 9588 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATG 1254548 | || ||||| | ||||||||| ||| Sbjct 9587 GTACTTGCTTCAACACCTTGTAAATG 9562 >seq780 Length=34333 Score = 95.1 bits (104), Expect = 1e-13 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 868718 TCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATCCACGGGAACGGGTTGGGC 868777 || |||||||||||||||||| | ||||| || ||||| | || ||||| | | Sbjct 30911 TCAAAAAAGTTGGTCTTGCCCCCTAGCGATATGTTTTCCATGAAATCAAAGGGGTTCGAC 30852 Query 868778 GTCTTGTAGTGCTTTTCGCATCCGAGCGACGCGAGCAGGCGGTCGGCGACAAACTCGATG 868837 | | |||| ||||||| || || | | || ||||||||||| || |||||||| Sbjct 30851 GACCTGTACACCTTTTCGTTGCCCAGGGCGACTAGAAGGCGGTCGGCAACGAACTCGATA 30792 Query 868838 TACTGGCACATGAGGCCGGCGTTCATGCCGATGAGCGCCACCGGCAGCGACTCGCTCACA 868897 ||||| ||| | | |||||||||||||| | || ||||| | ||| | | | Sbjct 30791 TACTGCTTCATCAAGGTGGCGTTCATGCCGAGTAATGCGCAGGGCAGGGCTTCGGTGAGA 30732 Query 868898 AACTCTTTCTCGATCTCGACGGCCTCGACGATGAT 868932 || |||| ||||| |||||| ||| |||||| Sbjct 30731 AATTCTTGTTCGATGGTGACGGCATCGGTGATGAT 30697 >seq113 Length=64593 Score = 89.7 bits (98), Expect = 6e-12 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 507714 TCAACCTGGCCGTCACGGGCACCTACAACGCCGACTTTGACGGCGACGAGATGAACCTGC 507773 ||||||| ||||||| |||||||||| |||||||||||||||||||||||| ||| Sbjct 22895 TCAACCTCTCCGTCACCTCGCCCTACAACGCAGACTTTGACGGCGACGAGATGAACTTGC 22836 Query 507774 ACGTGCCCCAGTCCGAG 507790 ||||||||||| |||| Sbjct 22835 ACGTGCCCCAGAGCGAG 22819 >seq568 Length=17807 Score = 87.8 bits (96), Expect = 2e-11 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 344181 GGTGGCCTTCCCCACCGAGACCGTCTACGGCCTCGGCGCCGACGCCACGTCTGACGAGGC 344240 |||||| || ||||||||||| |||||||| ||||| |||||||| ||| ||| || Sbjct 17403 GGTGGCATTTCCCACCGAGACAGTCTACGGGCTCGGGGCCGACGCGACGCGCAGCGATGC 17462 Query 344241 CGTGCGGCGCATCTTTGAGGTCAAGGGCCGACCCTCCAACAACCCGATCATTGTGCACGT 344300 |||||| ||| | | |||||||| || || | |||| ||| |||| |||||||| Sbjct 17463 CGTGCGCGCCATATATCGCGTCAAGGGTCGGCCGGCGGACAATCCGCTCATCGTGCACGT 17522 Query 344301 G 344301 | Sbjct 17523 G 17523 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107042281609377