Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cerataphis_20brasiliensis_20yeast- like_20symbiont_20[genbank_20GCA_5F000372705.1_202013-04-22] 1,181 sequences; 25,465,455 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq677 172 5e-38 seq598 114 1e-20 seq1010 91.5 1e-13 seq574 82.4 7e-11 >seq677 Length=7370 Score = 172 bits (190), Expect = 5e-38 Identities = 972/1527 (64%), Gaps = 62/1527 (4%) Strand=Plus/Plus Query 138508 ACCTGAAATTCACCGGCCAATACTCGACGAACGTAAATGTTGTTGGTGAAAGGCTCAAAC 138567 ||||| || || || |||| || || || |||||||||| ||| ||||||| || Sbjct 4852 ACCTGGAACTCGCCCGCCAGCACGCGTCGCTGGTAAATGTTGGACGTGTAAGGCTCGAAG 4911 Query 138568 GATTCGTTGTTTCCCAGAATCTGAGCCGTGGTCGCGGTCGGCATGTACGCCACCAAAAGA 138627 | ||||| || || || ||||| | |||| | || ||||||||| || |||| ||| Sbjct 4912 CACTCGTTATTGCCGAGGATCTGCGACGTGCTGGCCGTCGGCATGGGGGCTACCAGCAGA 4971 Query 138628 GAATTCCGTAAACCGTGAAGCTTGATTCGTTCCTTGAGCGACGACCAGTCCCACAAATCG 138687 || |||| || || |||||| | ||| |||| ||| ||||| | || Sbjct 4972 CTGTTGCGTATGCCATGCTCCTTGATCTGCTCCCGTAGCGTTTCCCACTCCCAGAGCTCT 5031 Query 138688 CTAGGTTTTTTGTTCCACATATCGTACTGTAACATTCCCAAACTTGCGGGACTGCCTTCG 138747 ||| || |||||||| || |||| | || ||| || || || | Sbjct 5032 GAAGGCTTCACCTTCCACATGTCAAACTGGAGCACGCCCTCCGACGCCGGCGATCCCTTA 5091 Query 138748 TACGAATCGTATACACCAAA-CTCTTGCGCCAACTCGTTGCTCGC-CTCGAGCGCACCAT 138805 |||| ||| || |||||| |||| ||| | || ||| || || | | Sbjct 5092 AACGACGAGTAGGGCCCTTCGCTCTTG-GCCAGCTCCATCGAGGCACTCAAG-GCGGCGT 5149 Query 138806 AGTAAATAGTTTCGGCAATCTGCTGATTGAGCAATCGGGCCTCGGCGCTCTCGTACGGCA 138865 ||| || |||||| || ||||| || ||| |||||||| | ||| |||||| Sbjct 5150 GGTAGATGGTTTCGAAGATTTGCTGGTTTAGCTCCCGGGCCTCCGGAGACTCAAACGGCA 5209 Query 138866 TGCGGAGCATCGTGAACGCGTCGGCCAGCCCTTGCACGCCCACTCCGACAGGGCGATGGC 138925 ||||||| | || || |||||||| || || || ||||| || | || || || | Sbjct 5210 TGCGGAGAGCCAGAAAAGCATCGGCCAGGCCCTGGACACCCACACCAATCGGCCGGTGCC 5269 Query 138926 GCAGATTTGACGCTTTTGCGG----CTTCGATAGGATAATAGTTTACATCGATGATTTTG 138981 ||| || ||| |||||| |||| | || |||| ||| || |||||||| | Sbjct 5270 GCATGTT----GCTGTTGCGGGCCTCTTCAACTGGGTAATGGTTGACGTCGATGATCCTA 5325 Query 138982 TTTAAATTTCGCACGACCACCTTAGTCGTATGCTTTAATCGT-TCAAAATCGTATGTGCC 139040 || | || || ||||| |||| ||| | | | | | | | || ||||| ||| Sbjct 5326 TTGAGGTTACGGACGACAACCTGCGTCACCT-CGTGGAGCTTCTGGAAGTCGTAGCAGCC 5384 Query 139041 CCCGTTGTCGTCGACGACGTCGACAAATTTGTTGACA---CAAATCGAGGCTATGTTGCA 139097 | ||| | ||||||||| | | || | | | ||||| | ||||| Sbjct 5385 CT-GTT--------CATAGTCGACAAAG--GCAGGCAGGGCTAGT-GAGGCCAGATTGCA 5432 Query 139098 CACCGCCACTTCGTCGGGGTCGCTGTATTCGACAATTTCGGCACACAAATTACTACACTT 139157 || || |||||||| || | ||| ||||| ||||| | || | || || | Sbjct 5433 GACGGCGACTTCGTCAGGTGCCGAGTACTCGACGATTTCCGTGCAAAGGTTCGAACTCCG 5492 Query 139158 GATCGTACCTAAATTTTGTTGATTGCTTTTTCGGTTACAAGCATCTTTGTAAAGCATATA 139217 || || || | || | |||||| || || ||||| || || ||||| |||||| | Sbjct 5493 AATGGTGCCCAGGTTCTTTTGATTACTCTTGCGGTTGCAGTGGTCCTTGTACAGCATAAA 5552 Query 139218 CGGTGTGCCAGTTTCCACTTGTGTCTCTATAAT-GAATTTGAACA-AGTCCCT-AGCTTG 139274 || |||| |||||| |||| || | || |||| | || || || ||| | Sbjct 5553 GGGATTGCCCGTTTCCGTCTGTGCTTCCAGGATAGAAT---ACCAGAGCTTCTGAGCCCG 5609 Query 139275 TA---TTTGACGCACGTAAAGTTCGTCGCGCTCGTACTTTTCGTAGAGTTCGTCGAATCG 139331 | | | || | | | | |||||||||||||||||||| || | || ||| Sbjct 5610 CACCGTCTTGCGGCC---ACGGCCCTCGCGCTCGTACTTTTCGTACAGAGCCTCAAATTC 5666 Query 139332 TTCACCGTAGGCGTCAGAAAGATCGCGACACTTGTCAGGACACATGAGCGACCATACGCC 139391 ||||||||| ||| | || || | || | || || |||||||||| ||| |||| Sbjct 5667 ATCACCGTAGCAGTCGGCCAGGCCGGGGCATTCGTTGGGGCACATGAGCGTCCAATCGCC 5726 Query 139392 GTTCGCCTTGACGCGCCTCATGAACAGATCCGGAATCCACAAAGCGAACAGCAAATCGCG 139451 ||| || |||||| |||||||||| ||||||||||||| || | | | ||||| Sbjct 5727 GTTTTTCTCCACGCGCTTCATGAACAGGTCCGGAATCCACAGGGCCAGGAAGAGGTCGCG 5786 Query 139452 CGCCTTCTTATCTTCCGAACCCATGTTACGT-TTCATGTTAAGGAAATCAAAAACGTCAG 139510 ||| || ||| ||||| | | | || | || || ||||| || || | Sbjct 5787 GGCCCGAACCTCCTCC-TTGCCATGGTTCTTGCGCAGATCCAGAAACTCAAACACATCGG 5845 Query 139511 CGTGCCATGGTTCCAGATAGATGGCCATTGCGCCTTTCCG---TTTGCCACCTTGATCGA 139567 ||||||| || |||| || ||||| | || ||| ||| ||||| || || |||| Sbjct 5846 CGTGCCACGGCTCCAAGTATATGGCAAAGGCACCTGGCCGCTTGTTGCCGCCCTGGTCGA 5905 Query 139568 CGTGTCGTACAGCATTATTGAATACGCGCAACATCGGCTCCAGACCGCTCGCTGTTCCGT 139627 ||| || | | ||| ||||| || || | ||| || | |||| ||| || |||| Sbjct 5906 CGTAGCGGGCCGTATTGTTGAAGACACGAAGCATGGGAATGACACCGTTCGAAGTCCCGT 5965 Query 139628 TGGTGCTACGG--ATG---GGACTGTTGCGAGCTCGGACGTCATGTACATTGATGCCGAT 139682 |||||| ||| ||| | || | | ||| |||| ||| || |||| ||||| Sbjct 5966 TGGTGC--CGGCAATGTAAGAACCGGT---AGCACGGATCCGATGCACGTTGAGCCCGAT 6020 Query 139683 TCCGCCGCCAAATTTGGATATTAAAACGCA-ATCGCGTAATGTCTCGTATATACCTCTTA 139741 |||||| | | ||||| || | |||| || | | || ||||| || || | Sbjct 6021 GCCGCCGGCCATCTTGGAGATCATGGCGCATGTCTTG-AGCGTGTCGTAGATGCCCTCGA 6079 Query 139742 TGCTGTCGTCCTGCATCGTGACCAGAAAGCATGACGAAAGTTGCGGTAGTTTCGTGCCGG 139801 ||||||| |||| ||| || || ||||| |||||||| || | |||||||| Sbjct 6080 TGCTGTCCTCCTTCATGTCAACGAGGAAGCACGACGAAAGCTGACACTGAGGCGTGCCGG 6139 Query 139802 CTGCAAACAGAGTAGGACTCGCGTGCGTGAACATTTGTTTCGACATCAATTCGTACGTTT 139861 | ||||| || || ||| || ||||| | | | ||||| | | |||||| | Sbjct 6140 CGTTGAACAGCGTCGGCGACGCATGGGTGAAGAACTTGCTGGACATGAGGTTGTACGTCT 6199 Query 139862 CGATGGCGCTCACAATATCCCTTCCGTGGATACCGACAGAGACTCGCATCAGCATATGTT 139921 ||| | | | | |||| | || ||||| || | || ||||| | ||| |||| Sbjct 6200 CGAGGACTCGGTCGATATTGCCGCCCCATATACCCACGGCAACGCGCATGATCATGTGTT 6259 Query 139922 GGATCCGTTCGGCCACCGCGCCCTCGAtttttttCAGATA--ACCGTTCTCTAGGGTCTT 139979 | || || | | | ||| |||| || || ||| | ||| || || ||||| Sbjct 6260 GAGGGCGCTCAACGATCTTGCCGTCGAGCTTGAGCAAATAAGAACGT--TCCAGTGTCTT 6317 Query 139980 GTAGCCAAAGTACCTATAGTTGAAATC 140006 | ||||||| ||| ||||| || || Sbjct 6318 GAAGCCAAAATACTGGTAGTTAAAGTC 6344 >seq598 Length=71582 Score = 114 bits (126), Expect = 1e-20 Identities = 111/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 24788 AAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAA 24847 |||||||| ||||| || || || |||||||| |||||||| |||||||||||||| ||| Sbjct 806 AAGATCCAGGACAAGGAGGGTATTCCTCCCGACCAACAACGCTTGATCTTTGCCGGAAAA 865 Query 24848 CAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACAC 24907 ||| |||||||| || | | |||| || || || ||||| || || || || ||||| Sbjct 866 CAGTTGGAGGATGGCAGGACCCTGTCCGACTACAATATTCAGAAAGAGTCAACGCTACAT 925 Query 24908 TTGGTGTTGCGATTGCGCGGAGG 24930 | || | || |||||||| || Sbjct 926 CTTGTCCTTCGCTTGCGCGGTGG 948 Score = 86.0 bits (94), Expect = 6e-12 Identities = 150/216 (69%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| |||||| | || || || || || || || ||||| | ||||| ||| | | Sbjct 1406 ATGCAAATCTTTGTCAAGACTCTGACGGGAAAGACGATTACCTTGGAAGTTGAATCTTCG 1465 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || || | || |||| || | ||| || |||||||| ||||| || |||||||| || Sbjct 1466 GATACGATTGACAACGTGAAGTCGAAA-ATACAAGACAAGGAAGGCATTCCTCCCGACCA 1524 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 ||| || | || ||||| || ||||| ||||| ||| | | || || ||||| Sbjct 1525 ACAGCGCCTCATATTTGCTGGAAAACAACTGGAAGATGGACGTACTCTGAGCGACTATAA 1584 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 |||||| || ||| || | ||| | ||| |||| Sbjct 1585 CATTCAGAAAGAAAGCACTTTGCACCTTGTGCTGCG 1620 >seq1010 Length=27177 Score = 91.5 bits (100), Expect = 1e-13 Identities = 125/175 (71%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 24719 AAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACG 24778 || || ||||| || || || || || ||||| || || | | ||||| | || | Sbjct 25689 AAGACCCTAACGGGCAAGACCATCACCCTCGAGGTCGAGTCGTCGGACACGATCGATAAT 25630 Query 24779 GTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTT 24838 || ||| ||||| || || || || || || ||||| ||||||||||| ||||||| Sbjct 25629 GTCAAATCCAAGATTCAGGATAAGGAGGGCATTCCTCCGGATCAACAACGACTGATCTTC 25570 Query 24839 GCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGG 24893 ||||| || ||||| ||||| ||| |||| ||||| ||||| ||||||| Sbjct 25569 GCCGGCAAGCAGCTTGAGGACGGCCGAACGCTGTCCGATTACAACATCCAAAAGG 25515 >seq574 Length=30825 Score = 82.4 bits (90), Expect = 7e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||||||||| | ||||| || || || || || || || || || || || | | Sbjct 26796 GATGCAGATCTTCGTCAAAACCCTCACGGGGAAGACAATCACCCTTGAGGTGGAGTCTTC 26737 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | || || ||||| || || || || || || || ||||| || Sbjct 26736 TGACACCATCGATAACGTCAAGTCCAAGATTCAGGATAAGGAGGGCATTCCCCCCGACCA 26677 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || || | ||||||||||| || ||||| || ||| ||| |||| || || || Sbjct 26676 GCAGCGCCTCATCTTTGCCGGAAAGCAGCTCGAAGATGGCCGAACCATGAGCGACTACAA 26617 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCG 24932 ||| || ||||| || || ||| | || |||| | ||||| |||| Sbjct 26616 CATCCAGAAGGAGAGCACTCTGCACCTCGTCCTGCGCCTTCGCGGTGGCG 26567 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449890958386680