Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cerataphis_20brasiliensis_20yeast- like_20symbiont_20[genbank_20GCA_5F000372705.1_202013-04-22] 1,181 sequences; 25,465,455 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq574 123 2e-23 seq598 105 4e-18 seq1010 93.3 3e-14 >seq574 Length=30825 Score = 123 bits (136), Expect = 2e-23 Identities = 158/217 (73%), Gaps = 8/217 (4%) Strand=Plus/Plus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 |||||| ||||| | |||||||||||||| ||||| ||||| | | | || |||| Sbjct 26583 CAGGACGAGGTGCAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCTCATGGTTCGGCCATC 26642 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || || ||||||||||| ||||| || || |||||||| | || | |||||||| || Sbjct 26643 TTCGAGCTGCTTTCCGGCAAAGATGAGGCGCTGCTGGTCGGGGGGAATGCCCTCCTTATC 26702 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTA 34940 | || || ||||| | ||||||| ||| | ||| || |||| ||| | Sbjct 26703 CTGAATCTTGGACTTGAC----GTTATCGATGGTGTCAGAAGACTCCACCTCAAGGGTGA 26758 Query 34941 TGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | ||||| ||||||||||| || || ||||||||||| Sbjct 26759 TTGTCTTCCCCGTGAGGGTTTTGACGAAGATCTGCAT 26795 >seq598 Length=71582 Score = 105 bits (116), Expect = 4e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| || ||||| | ||||| || ||||||||||||||||| || | || |||| Sbjct 1618 CAGCACAAGGTGCAAAGTGCTTTCTTTCTGAATGTTATAGTCGCTCAGAGTACGTCCATC 1559 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 |||||||| ||||| || || || || || || ||||| | || | || |||||||| Sbjct 1558 TTCCAGTTGTTTTCCAGCAAATATGAGGCGCTGTTGGTCGGGAGGAATGCCTTCCTTGTC 1499 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | |||||| || ||| | |||| || | || || || | ||| || || Sbjct 1498 TTGTATTTTCGACTTCACGTTGTCAATCGTATCCGAAGATTCAACTTCCAAGGTAATCGT 1439 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||||||| || ||||| |||||||| ||||| Sbjct 1438 CTTTCCCGTCAGAGTCTTGACAAAGATTTGCAT 1406 >seq1010 Length=27177 Score = 93.3 bits (102), Expect = 3e-14 Identities = 133/185 (72%), Gaps = 8/185 (4%) Strand=Plus/Plus Query 34788 CCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGA 34847 |||| || ||||| || || || || | || | || || || ||||| |||||||||| Sbjct 25515 CCTTTTGGATGTTGTAATCGGACAGCGTTCGGCCGTCCTCAAGCTGCTTGCCGGCGAAGA 25574 Query 34848 TCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATG 34907 |||||||||| || || | || | |||||||| || | || || |||||| || Sbjct 25575 TCAGTCGTTGTTGATCCGGAGGAATGCCCTCCTTATCCTGAATCTTGGATTTGAC--AT- 25631 Query 34908 CTATCGAT----TCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTT 34963 ||||||| || | |||||| || | ||| |||||||| ||||| ||||||||| Sbjct 25632 -TATCGATCGTGTCCGACGACTCGACCTCGAGGGTGATGGTCTTGCCCGTTAGGGTCTTT 25690 Query 34964 ACAAA 34968 || || Sbjct 25691 ACGAA 25695 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325688112161039