Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cerataphis_20brasiliensis_20yeast- like_20symbiont_20[genbank_20GCA_5F000372705.1_202013-04-22] 1,181 sequences; 25,465,455 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq598 165 2e-35 >seq598 Length=71582 Score = 165 bits (182), Expect = 2e-35 Identities = 174/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | |||||| || || | |||| || || |||||||| ||||| || || | Sbjct 1178 TACCGCCGCGCAAACGAAGGACAAGATGCAACGTGGACTCTTTCTGAATATTGTAGTCGG 1119 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | ||| ||| ||| || || || || || ||||||||||| || | |||||||| || | Sbjct 1118 ACAGAGTTCGACCATCCTCGAGCTGCTTACCAGCAAAGATCAGGCGCTGTTGATCCGGGG 1059 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || || ||||| || |||||||||| || ||||| || || || || | ||| | Sbjct 1058 GAATGCCCTCCTTGTCCTGAATCTTTGACTTCACATTATCGATGGTGTCGGACGATTCGA 999 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||| ||| ||||||||||| ||||||||||| || ||||| ||||| Sbjct 998 CTTCCAGAGTGATCGTCTTGCCAGTCAACGTCTTGACGAATATTTGCAT 950 Score = 154 bits (170), Expect = 3e-32 Identities = 163/215 (76%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 ||||| || | ||||| ||| ||||||||| || ||||| || ||| | | || Sbjct 1620 CGCAGCACAAGGTGCAAAGTGCTTTCTTTCTGAATGTTATAGTCGCTCAGAGTACGTCCA 1561 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 ||||| ||||||||||||||||| || || | ||||| || ||||| || |||||||| Sbjct 1560 TCTTCCAGTTGTTTTCCAGCAAATATGAGGCGCTGTTGGTCGGGAGGAATGCCTTCCTTG 1501 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 ||||| || || | || || || ||||||||||| || ||| |||||||| || ||| Sbjct 1500 TCTTGTATTTTCGACTTCACGTTGTCAATCGTATCCGAAGATTCAACTTCCAAGGTAATC 1441 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| || |||| ||||| ||||| || ||||| Sbjct 1440 GTCTTTCCCGTCAGAGTCTTGACAAAGATTTGCAT 1406 Score = 147 bits (162), Expect = 4e-30 Identities = 170/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 ||||||| | || |||||| || | ||||| ||| || |||||||| || || || |||| Sbjct 1406 TACCTCCACGCAGACGCAGGACGAGGTGCAAAGTGGACTCTTTCTGGATGTTGTAGTCAG 1347 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || | | || || || |||||||||||||| || || || | || || || |||| Sbjct 1346 AGAGGGTCCGGCCATCCTCAAGTTGTTTTCCAGCGAATATCAGGCGCTGCTGGTCAGGAG 1287 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || || |||||||| |||||||| | || || || || || || || | ||| | Sbjct 1286 GGATGCCCTCCTTATCCTGAATCTTGGACTTGACGTTGTCGATGGTGTCGGACGATTCGA 1227 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||||| || ||||||||||| || || ||||| || || || ||||| Sbjct 1226 CTTCCAACGTAATCGTCTTGCCGGTTAATGTCTTGACGAAGATTTGCAT 1178 Score = 113 bits (124), Expect = 9e-20 Identities = 148/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | ||| || || || | || || || || |||||||| ||||| || || | Sbjct 950 TACCACCGCGCAAGCGAAGGACAAGATGTAGCGTTGACTCTTTCTGAATATTGTAGTCGG 891 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || | || || || || | |||||||| |||||||| | | |||||| || |||| Sbjct 890 ACAGGGTCCTGCCATCCTCCAACTGTTTTCCGGCAAAGATCAAGCGTTGTTGGTCGGGAG 831 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || || ||||| || || ||||| | || ||||| || || |||||| | |||| Sbjct 830 GAATACCCTCCTTGTCCTGGATCTTGGACTTGACATTATCGATAGTATCAGACGACTCTA 771 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGT 82786 | || | ||| ||||||||||| || Sbjct 770 CCTCAAGAGTGATCGTCTTGCCAGT 746 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981812343420359