Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cerataphis_20brasiliensis_20yeast- like_20symbiont_20[genbank_20GCA_5F000372705.1_202013-04-22] 1,181 sequences; 25,465,455 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq677 369 4e-97 seq574 107 2e-18 seq598 98.7 1e-15 seq1010 93.3 4e-14 >seq677 Length=7370 Score = 369 bits (408), Expect = 4e-97 Identities = 1165/1769 (66%), Gaps = 81/1769 (5%) Strand=Plus/Plus Query 148052 CGACTGGCTCTGGTCAATGAACGCGCCACGGTCAGCGGCCATTTCAATGA---GTCGCTT 148108 ||||||| |||||| || || || || ||||| || ||||| | | | |||||| Sbjct 4638 CGACTGGGACTGGTCGATAAAGGCACCGCGGTCGGCCGCCATCTGCACCACCTGTCGCTG 4697 Query 148109 TATCTTCATCTCCCAGGCCGTCTTGTACAGCCGCTTGATATGATCGGGAATGCCGTCGAT 148168 | ||||||||| |||||||||| || ||||| | | | || ||| | ||| Sbjct 4698 ---CGAAATCTCCCAGACCGTCTTGTAAAGTGCCTTGACGTCAGCAGGGATGTTGGGGAT 4754 Query 148169 GCGCTGCACCGAGCCGCGGTGCGCAAAAATCTGATTGCGCATTTCGTCCGTGTATAGGTT 148228 | ||| | || ||| | ||||| || | || ||| ||||| ||| | Sbjct 4755 GTTCTGGATGGACCCGTTTTCCGCAATGATTCGGTTTTTCATCGAGTCCGACCATAAGCC 4814 Query 148229 GAGCTCGATCAGGTCATCGATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCAC 148288 | || | |||||| | || ||| | | || |||||||| |||||||| || ||||| Sbjct 4815 CAAGTCAACCAGGTCCTTGAGCAGCCAGGGGTTGACCACCTGGAACTCGCCCGCCAGCAC 4874 Query 148289 GCGCCGCAGATACACGTTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTG 148348 ||| ||| | || | |||| ||| | || || || ||||||| ||||| | ||||| Sbjct 4875 GCGTCGCTGGTAAATGTTGGACGTGTAAGGCTCGAAGCACTCGTTATTGCCGAGGATCTG 4934 Query 148349 CGCGGTCGTTGCCGTGGGCATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTT 148408 || || | ||||| |||||| ||||||||||| |||||| | || | | || Sbjct 4935 CGACGTGCTGGCCGTCGGCATGGGGGCTACCAGCAGACTGTTGCGTATGCCATGCTCCTT 4994 Query 148409 TATTTTGCGCTTCAGAGCCG---CCCAGTCCCAGAGCGGCGACGGTGTCACGTTCCACAT 148465 || | ||| | | || |||| ||||||||| || || |||| |||||||| Sbjct 4995 GATCT---GCTCCCGTAGCGTTTCCCACTCCCAGAGCTCTGAAGGCTTCACCTTCCACAT 5051 Query 148466 GTCGTACTGCAGAATGCCG-CGGCTAGCGGGGCTGCCCTCGTACGAGCTGTACGGTCCGT 148524 ||| |||| || | ||| | | ||| | | |||| |||| ||| || || | Sbjct 5052 GTCAAACTGGAGCACGCCCTCCGACGCCGGCGAT-CCCTTAAACGACGAGTAGGGCCCTT 5110 Query 148525 GCGC-CGCCGCCAGTTCGCAGCTCGCC--TCGAGCGCGCCGTAGTAAATCGTCTCGGCAA 148581 ||| | ||||| || || | | | || || ||| ||| ||| || || ||| | Sbjct 5111 -CGCTCTTGGCCAGCTC-CATCGAGGCACTCAAG-GCGGCGTGGTAGATGGTTTCGAAGA 5167 Query 148582 TTTGCCTGTTGAGCAGC---GCCGCCG-ACTCGCTTTCGTACGGCATACGCAGCCGCACA 148637 ||||| ||| ||| | ||| ||| | | || ||||||| || || || | Sbjct 5168 TTTGCTGGTTTAGCTCCCGGGCCTCCGGAGAC----TCAAACGGCATGCGGAGAGCCAGA 5223 Query 148638 AACGCGTCGGCAAGGCCCTGTACGCCCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGG 148697 || || ||||| |||||||| || ||||| ||||| |||||||| |||||| | | Sbjct 5224 AAAGCATCGGCCAGGCCCTGGACACCCACACCAATCGGCCGGTGCCGCATGTTGCTGTTG 5283 Query 148698 CGCGCGCTCTCGAGC-GGATAGTGGTTGCGGTCGATGATCTTGTCAAGATTGCGCACCAC 148756 || || |||| | | || || |||||| |||||||||| | | || || || || || Sbjct 5284 CGGGC-CTCTTCAACTGGGTAATGGTTGACGTCGATGATCCTATTGAGGTTACGGACGAC 5342 Query 148757 CACCTTTGTAATTCTGCGCAGCAATTCAAAATCGTA------CTTGTCATCTACGATGCA 148810 |||| || | | | ||| | || ||||| || |||| ||| || Sbjct 5343 AACCTGCGTCACCTCGTGGAGCTTCTGGAAGTCGTAGCAGCCCTGTTCATAGTCGA--CA 5400 Query 148811 TCGGTT--CACGGCGATAGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTAC 148868 || || ||| | ||||| |||||||| ||||| || || || || |||| Sbjct 5401 AAGGCAGGCAGGGCTAGTGAGGCCAGATTGCAGACGGCGACTTCGTCAGGTGCCGAGTAC 5460 Query 148869 TCTACGATCTCGGCGCACAGATTG---CTGCATTTGATCACGCCCACGTTCTTTTGATTG 148925 || ||||| || | ||| || || || | || | ||||| |||||||||||| Sbjct 5461 TCGACGATTTCCGTGCAAAGGTTCGAACTCCGAATGGT---GCCCAGGTTCTTTTGATTA 5517 Query 148926 CTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTT 148985 ||||||| |||||| ||||||||||||||| | || ||| |||||| ||| | | Sbjct 5518 CTCTTGCGGTTGCAGTGGTCCTTGTACAGCATAAAGGGATTGCCCGTTTCCGTCTGTGCT 5577 Query 148986 TCCACTAT-GAACCGATGCAGGTCCTGCGCGCGCAC----TTGCTGCTCGTAGCGACCCT 149040 |||| || ||| | || | ||| || ||||| |||| || || |||| Sbjct 5578 TCCAGGATAGAATACCAG-AGCTTCTGAGCCCGCACCGTCTTGCGGCCA----CGGCCCT 5632 Query 149041 CCTGCTCGTA--TAAAGTATACAGCCGCTCGAACGCCTCGCCGTAGCAATCGTCGAGACC 149098 | ||||||| | ||| | |||| || || | || |||||||| ||| | || || Sbjct 5633 CGCGCTCGTACTTTTCGTACAGAGCC--TCAAATTCATCACCGTAGCAGTCGGCCAGGCC 5690 Query 149099 GGGGCACTTGTGCGGGCACATGAGCGACCACACGCCGTCCGCGTACACGCGCTTCATAAA 149158 |||||| | || ||||||||||||| ||| |||||| | |||||||||||| || Sbjct 5691 GGGGCATTCGTTGGGGCACATGAGCGTCCAATCGCCGTTTTTCTCCACGCGCTTCATGAA 5750 Query 149159 CAGATCGGGCACCCAGAGCGCGTACATGAGGTCGCGCGCCTTGCAGTCTTCGGCGCCCAT 149218 ||| || || | ||| || || | ||||||||| ||| || || ||| Sbjct 5751 CAGGTCCGGAATCCACAGGGCCAGGAAGAGGTCGCGGGCCCGAACCTCCTCCTTGCCATG 5810 Query 149219 GTTGCGGCGCAGGTTGAGCACGCTGAATATGTCCGCGTGCCACGGCTCAATGTACACCGC 149278 ||| |||||| | || | || | || |||||||||||||| | ||| | || Sbjct 5811 GTTCTTGCGCAGATCCAGAAACTCAAACACATCGGCGTGCCACGGCTCCAAGTATATGGC 5870 Query 149279 GAGCGCGCCCTTGCGCTTG---CCGCCCTGGTCGACGTGGCGCACCATGTTGTTAAACAC 149335 | || || |||||| |||||||||||||||| ||| || | ||||| || || Sbjct 5871 AAAGGCACCTGGCCGCTTGTTGCCGCCCTGGTCGACGTAGCGGGCCGTATTGTTGAAGAC 5930 Query 149336 TCGAACCATAGGTTCAATGCCACTG---GCAGTGCCGTTAGTAGAGCTAATGCGACTGCC 149392 |||| ||| || |||| ||| | | ||| ||||| || | |||| | || Sbjct 5931 ACGAAGCATGGG---AATGACACCGTTCGAAGTCCCGTTGGTGCCGGCAATGTAAGAACC 5987 Query 149393 GCGCGCTCGCACTTTGTGCACGTTGACGCCGATGCCGCCGCCGTACTTTGAGATGGCCGC 149452 | || || | |||||||||| |||||||||||| | ||| ||||| || Sbjct 5988 GGTAGCACGGATCCGATGCACGTTGAGCCCGATGCCGCCGGCCATCTTGGAGATCATGGC 6047 Query 149453 GCA-GTCGCCGAGCGTCGAGTAGATGCCCTCGATGCTGTCGCGCTTCATGGTCAGC-AGA 149510 ||| ||| |||||| ||||||||||||||||||||| |||||| |||| | || Sbjct 6048 GCATGTC-TTGAGCGTGTCGTAGATGCCCTCGATGCTGTCCTCCTTCAT-GTCAACGAGG 6105 Query 149511 AAGCACGAGCACATTTGCGGAAA---ACGCGTGCCGGCCGCGAACATGGTGGGGCTGGCG 149567 |||||||| | | || || | | |||||||||| ||||| || || || Sbjct 6106 AAGCACGACGAAA---GCTGACACTGAGGCGTGCCGGCGTTGAACAGCGTCGGCGACGCA 6162 Query 149568 TGTGT-AAAATATTTCTGGCTCATCATCTCGTACGACTCGAGCACGCGGTCCATGTCATC 149626 || || || | || |||| ||| | | ||||| |||||| || ||||| || | | Sbjct 6163 TGGGTGAAGAACTTGCTGG-ACATGAGGTTGTACGTCTCGAGGACTCGGTCGATATTGCC 6221 Query 149627 GCCATGGATGCCTATGGCGACGCGCATCAGCATATGCTGCGGTCGCTCCGCCACTTTGTT 149686 ||| || || | ||| |||||||| | ||| || || || ||||| | | ||| Sbjct 6222 GCCCCATATACCCACGGCAACGCGCATGATCATGTGTTGAGGGCGCTCAACGATCTTGCC 6281 Query 149687 TCCAATTTTGAGCAAGTAGCCGTTTTCTAGTGTCTTGTAGCCAAAGTACTTGTAGTCAAA 149746 | | |||||||| || ||| ||||||||| ||||||| |||| ||||| ||| Sbjct 6282 GTCGAGCTTGAGCAAATAAGAACGTTCCAGTGTCTTGAAGCCAAAATACTGGTAGTTAAA 6341 Query 149747 GTCGCGGCCGTGGTCAATGGCGGCGTCGA 149775 ||| ||| | | | ||||| | ||||| Sbjct 6342 GTCCCGGTCATAGATGATGGCCGAGTCGA 6370 >seq574 Length=30825 Score = 107 bits (118), Expect = 2e-18 Identities = 141/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 133469 CTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCCCGCGT 133527 ||| ||||| || ||||| |||| ||| || | | | || ||||||||||| || || Sbjct 26604 CTCCTTCTGGATGTTGTAGTCGCTCATGGTTCGGCCA-TCTTCGAGCTGCTTTCCGGCAA 26662 Query 133528 AAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCT 133587 | ||||| |||||||||||||| || ||||| ||||| || ||||| ||||| | Sbjct 26663 AGATGAGGCGCTGCTGGTCGGGGGGAATGCCCTCCTTATCCTGAATCTTGGACTTGACGT 26722 Query 133588 GCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTA 133647 || | ||||| | | |||||| || | ||||| || || || || || ||||| | Sbjct 26723 TATCGATGGTGTCAGAAGACTCCACCTCAAGGGTGATTGTCTTCCCCGTGAGGGTTTTGA 26782 Query 133648 CGAAAATCTGCAT 133660 |||| |||||||| Sbjct 26783 CGAAGATCTGCAT 26795 >seq598 Length=71582 Score = 98.7 bits (108), Expect = 1e-15 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 |||||||||||||| |||||||| ||| || || ||| | |||||||||||||| || Sbjct 1146 GTGGACTCTTTCTGAATATTGTAGTCGGACAGAGTTCGACCA-TCCTCGAGCTGCTTACC 1088 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || || ||||| || || || || ||||| |||||||| |||||| ||| Sbjct 1087 AGCAAAGATCAGGCGCTGTTGATCCGGGGGAATGCCCTCCTTGTCCTGAATCTTTGACTT 1028 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | || | ||||||| | || || || | |||| || ||||| |||| || Sbjct 1027 CACATTATCGATGGTGTCGGACGATTCGACTTCCAGAGTGATCGTCTTGCCAGTCAACGT 968 Query 133643 TTTTACGAAAATCTGCAT 133660 || ||||| || ||||| Sbjct 967 CTTGACGAATATTTGCAT 950 >seq1010 Length=27177 Score = 93.3 bits (102), Expect = 4e-14 Identities = 131/182 (72%), Gaps = 4/182 (2%) Strand=Plus/Plus Query 133473 TTCTGTATATTGTAATCGCCCATCGT--GGACGAGTCCTCGAGCTGCTTGCCCGCGTAAA 133530 || || || ||||||||| || ||| || || ||||| ||||||||||| ||| | | Sbjct 25517 TTTTGGATGTTGTAATCGGACAGCGTTCGGCCG--TCCTCAAGCTGCTTGCCGGCGAAGA 25574 Query 133531 TGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGCT 133590 | || || || || || ||||| ||||| ||||| || ||||| |||| | | Sbjct 25575 TCAGTCGTTGTTGATCCGGAGGAATGCCCTCCTTATCCTGAATCTTGGATTTGACATTAT 25634 Query 133591 CAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTACGA 133650 | | |||||| | | ||| || |||| ||||| ||| ||||| || || || ||||||| Sbjct 25635 CGATCGTGTCCGACGACTCGACCTCGAGGGTGATGGTCTTGCCCGTTAGGGTCTTTACGA 25694 Query 133651 AA 133652 || Sbjct 25695 AA 25696 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483413663500440