Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cerataphis_20brasiliensis_20yeast- like_20symbiont_20[genbank_20GCA_5F000372705.1_202013-04-22] 1,181 sequences; 25,465,455 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq574 105 2e-17 seq598 96.9 8e-15 >seq574 Length=30825 Score = 105 bits (116), Expect = 2e-17 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || |||||| ||||| || || || ||||| | || ||||| ||||||| Sbjct 26792 CAGATCTTCGTCAAAACCCTCACGGGGAAGACAATCACCCTTGAGGTGGAGTCTTCTGAC 26733 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| |||||||| || || || || ||| || ||| || Sbjct 26732 ACCATCGATAACGTCAAGTCCAAGATTCAGGATAAGGAGGGCATTCCCCCCGACCAGCAG 26673 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||| |||||||||||| | |||||||| | || || ||| |||||| || Sbjct 26672 CGCCTCATCTTTGCCGGAAAGCAGCTCGAAGATGGCCGAACCATGAGCGACTACAACATC 26613 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 ||||| ||| ||||| ||||| || || | ||||| Sbjct 26612 CAGAAGGAGAGCACTCTGCACCTCGTCCTGCGCCTTCG 26575 >seq598 Length=71582 Score = 96.9 bits (106), Expect = 8e-15 Identities = 145/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 || ||||| ||| ||| | || || || ||||||||| ||||||| ||| || ||| Sbjct 953 CAAATATTCGTCAAGACGTTGACTGGCAAGACGATCACTCTGGAAGTCGAATCGTCCGAC 1012 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| ||||||||| || || || || ||| ||||| || Sbjct 1013 ACCATCGATAATGTGAAGTCAAAGATTCAGGACAAGGAGGGCATTCCCCCGGATCAACAG 1072 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||| || || |||||| | || ||||| | ||| || |||| ||||| | Sbjct 1073 CGCCTGATCTTTGCTGGTAAGCAGCTCGAGGATGGTCGAACTCTGTCCGACTACAATATT 1132 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||||||||| || | || ||||| Sbjct 1133 CAGAAAGAGTCCACGTTGCATCTTGT 1158 Score = 95.1 bits (104), Expect = 3e-14 Identities = 133/187 (71%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 206192 TCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGC 206251 |||| || || ||||||||| | || || || ||||| || |||| || ||| Sbjct 744 TCACTGGCAAGACGATCACTCTTGAGGTAGAGTCGTCTGATACTATCGATAATGTCAAGT 803 Query 206252 AAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAA 206311 ||||| || || || || || ||| || ||| ||| | | ||||| ||||||| Sbjct 804 CCAAGATCCAGGACAAGGAGGGTATTCCTCCCGACCAACAACGCTTGATCTTTGCCGGAA 863 Query 206312 AGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTC 206371 | |||||||| ||||| ||||| || |||| ||||| | ||||||||||| || || | Sbjct 864 AACAGTTGGAGGATGGCAGGACCCTGTCCGACTACAATATTCAGAAAGAGTCAACGCTAC 923 Query 206372 ACCTTGT 206378 | ||||| Sbjct 924 ATCTTGT 930 Score = 84.2 bits (92), Expect = 5e-11 Identities = 142/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 || || ||| ||| || || || ||||| ||||| || |||||||| ||| ||| || Sbjct 1409 CAAATCTTTGTCAAGACTCTGACGGGAAAGACGATTACCTTGGAAGTTGAATCTTCGGAT 1468 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| || || ||||| || ||||| ||| || ||| || Sbjct 1469 ACGATTGACAACGTGAAGTCGAAAATACAAGACAAGGAAGGCATTCCTCCCGACCAACAG 1528 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || || || || ||||| || ||||||||||| | ||| || ||| || ||| | Sbjct 1529 CGCCTCATATTTGCTGGAAAACAACTGGAAGATGGACGTACTCTGAGCGACTATAACATT 1588 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 |||||||| ||| | |||||||| Sbjct 1589 CAGAAAGAAAGCACTTTGCACCTTGT 1614 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181802917204701