Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cerataphis_20brasiliensis_20yeast- like_20symbiont_20[genbank_20GCA_5F000372705.1_202013-04-22] 1,181 sequences; 25,465,455 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq677 201 1e-46 seq598 98.7 9e-16 seq780 95.1 1e-14 seq574 95.1 1e-14 >seq677 Length=7370 Score = 201 bits (222), Expect = 1e-46 Identities = 993/1547 (64%), Gaps = 59/1547 (4%) Strand=Plus/Plus Query 146893 TTGACCACTTGAAACTCGCCCGCCAGCACACGTCTGAGATACACATTGCTAGTGAAAGGC 146952 |||||||| || ||||||||||||||||| |||| | || | ||| ||| ||||| Sbjct 4846 TTGACCACCTGGAACTCGCCCGCCAGCACGCGTCGCTGGTAAATGTTGGACGTGTAAGGC 4905 Query 146953 TCAAAAGACTCATTATTGCCTAATATTTGGGCCGTGGTTGCGGTAGGCATGTACGCCACC 147012 || || |||| |||||||| | || || | |||| | || || |||||| || ||| Sbjct 4906 TCGAAGCACTCGTTATTGCCGAGGATCTGCGACGTGCTGGCCGTCGGCATGGGGGCTACC 4965 Query 147013 AACAATGAATTTCGCAGACCGTACGCACGGATGTTGTCCTTCAAAGTTTGCCAGTCCCAC 147072 | || || || | || | | | ||| | ||| | |||| ||| ||||| Sbjct 4966 AGCAGACTGTTGCGTATGCCATGCTCCTTGATCTGCTCCCGTAGCGTTTCCCACTCCCAG 5025 Query 147073 ATCGACGAGGGCGTCACGTTCCACATGTCGTACTGGAGCACTCCT--CGACTGGCGGGAC 147130 | | || ||| |||| ||||||||||| |||||||||| || |||| || || Sbjct 5026 AGCTCTGAAGGCTTCACCTTCCACATGTCAAACTGGAGCACGCCCTCCGAC--GCCGGCG 5083 Query 147131 TGCCAGCGAACGTAGTGTAGCTTCCGTCGCGCTGCGCCAATTCACAGCTTGCC--TCGAG 147188 || |||| | |||| || |||| || |||| || || | | | || || Sbjct 5084 ATCCCTTAAACGACGAGTAGGGCCCTTCGCTCTTGGCCAGCTC-CATCGAGGCACTCAAG 5142 Query 147189 CGCTCCATAGTATATGGTTTCGGCGATTTGTTTGTTTAGGACGGTCGCTTCTTCGCTCTC 147248 || | | ||| ||||||||| |||||| | |||||| | || || ||| Sbjct 5143 -GCGGCGTGGTAGATGGTTTCGAAGATTTGCTGGTTTAGCTCCCGGGCCTCCGGAGACTC 5201 Query 147249 GTAAGGCATACGCAGAAGCACAAAGGCATCGGCCAAACCCTGGATACCGACGCCGATAGG 147308 | ||||| || ||| || ||| |||||||||| ||||||| ||| || || || || Sbjct 5202 AAACGGCATGCGGAGAGCCAGAAAAGCATCGGCCAGGCCCTGGACACCCACACCAATCGG 5261 Query 147309 TCGATGCTTTTCGTTGCTGCGCTTCGCGC-TCG-CTATGGGATAGTGGTTGCGATCAATA 147366 || ||| ||||||| | || || || | | || || |||||| || || Sbjct 5262 CCGGTGCCGCATGTTGCTGT--TGCGGGCCTCTTCAACTGGGTAATGGTTGACGTCGATG 5319 Query 147367 ATCTTGTTGAGGTTACGCACTACAACTTTAGTTATTGTTTTGAGTTTCTCGAAATCATA- 147425 ||| | ||||||||||| || ||||| | || | | ||| |||| ||| || || Sbjct 5320 ATCCTATTGAGGTTACGGACGACAACCTGCGTCACCTCGTGGAGCTTCTGGAAGTCGTAG 5379 Query 147426 -AGTCCCG-TCTTCGAC-ACGTACGCATTGGTTCACGGCGATAGACGCCAGATTGCAGAC 147482 || || | || | | | || | ||| || || ||| | || |||||||||||||| Sbjct 5380 CAGCCCTGTTCATAGTCGACAAAGGCA--GG--CAGGGCTAGTGAGGCCAGATTGCAGAC 5435 Query 147483 GGCCGTCTCTTC-GGCGTCGCTGTACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTA 147541 ||| || || || | || ||||| |||||||| | ||| ||||| | | Sbjct 5436 GGCGACTTCGTCAGGTGCCG-AGTACTCGACGATTTCCGTGCAAAGGTTCGAACTCCGAA 5494 Query 147542 TGACTCCCAAATTTTGCTGATTGCTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACG 147601 || |||| || | ||||| || || || ||||| ||| ||| | ||||| | | Sbjct 5495 TGGTGCCCAGGTTCTTTTGATTACTCTTGCGGTTGCAGTGGTCCTTGTACAGCATAAAGG 5554 Query 147602 GTCCGCCGGTCTCGACTTGCGTTTCAACGATAAACCTATGC---AGGTCCTGCGCTCGCA 147658 | ||| || || || | ||| | |||| | || | || | ||| || |||| Sbjct 5555 GATTGCCCGTTTCCGTCTGTGCTTCCAGGATAGA---ATACCAGAGCTTCTGAGCCCGCA 5611 Query 147659 CCCGCTGCCGATAGCGGCCCTCGTTTTCGTACCGCTCGTACAACCGCTCAAACTCGTCGC 147718 || || || ||||||||| |||||| ||||||| |||||| || || | Sbjct 5612 CCGTCTTGCGGCCACGGCCCTCGCGCTCGTACTTTTCGTACAGAGCCTCAAATTCATCAC 5671 Query 147719 CGTAGCAATCGGCAAGGCCGGGACACTGATGCGGACACATCAGCGACCACATGTCGTCCG 147778 ||||||| ||||| |||||||| || | | || ||||| |||| ||| | ||| Sbjct 5672 CGTAGCAGTCGGCCAGGCCGGGGCATTCGTTGGGGCACATGAGCGTCCAATCGCCGTTTT 5731 Query 147779 CGTTAACGCGTCGCATAAACAGATCCGGCACCCACAGCGCGTACATAAGATCGCGCGCTT 147838 | ||||| ||| ||||| ||||| | |||||| || | || ||||| || Sbjct 5732 TCTCCACGCGCTTCATGAACAGGTCCGGAATCCACAGGGCCAGGAAGAGGTCGCGGGCCC 5791 Query 147839 TGCAATCCTCGGCGCCCATG----TTGCGTTTCAAATTAAGCACGCTATAGATGTCGGCG 147894 ||||| | ||||| ||||| || || || | | | | |||||| Sbjct 5792 GAACCTCCTCCTTG-CCATGGTTCTTGCG---CAGATCCAGAAACTCAAACACATCGGCG 5847 Query 147895 TGCCAGGGTTCAATGTAGACGGCCAGCGCACCTTTACGC---TTTCCGCCCTGGTCGACA 147951 ||||| || || | ||| | ||| | |||||| ||| || |||||||||||||| Sbjct 5848 TGCCACGGCTCCAAGTATATGGCAAAGGCACCTGGCCGCTTGTTGCCGCCCTGGTCGACG 5907 Query 147952 TGGCGCACCATGTTGTTAAACACGCGCACCATGGGTTCCAGGCCGCTCGCAGTGCCGTTG 148011 | ||| || | ||||| || || || | |||||| | ||| ||| ||| |||||| Sbjct 5908 TAGCGGGCCGTATTGTTGAAGACACGAAGCATGGGAATGACACCGTTCGAAGTCCCGTTG 5967 Query 148012 GTGGAATTGATCTTGCTGCCGCGGGCTCGCACTTCG-TGCACGTTAACGCCAATGCCGCC 148070 ||| || | ||| || || | | || |||||||| | || |||||||| Sbjct 5968 GTGCCGGCAATGTAAGAACCGGTAGCACGGA-TCCGATGCACGTTGAGCCCGATGCCGCC 6026 Query 148071 GCCGTACTTTGATATGGCAGCGCA---ATCGCCCAATGTCGTGTAGATGCCGTCGATGCT 148127 | | ||| || || ||||| | | | |||| ||||||||| |||||||| Sbjct 6027 GGCCATCTTGGAGATCATGGCGCATGTCTTGAGC-GTGTC--GTAGATGCCCTCGATGCT 6083 Query 148128 GTCGTTTTTGACGCCAAGCAAAAAACACGAACACATTTG---CGGAATCCGCGTTCCCGC 148184 ||| | || | | ||| | || ||||| | | || | || |||| || || Sbjct 6084 GTCCTCCTTCATGTCAACGAGGAAGCACGACGAAAGCTGACACTGA---GGCGTGCCGGC 6140 Query 148185 CGAGAAAAGGGTGGGACTCGCGTGCGTAAACAATTT--TTGACTCATCATGCGATACGTC 148242 ||| || || || ||| || || || || || | || ||| | | |||||| Sbjct 6141 GTTGAACAGCGTCGGCGACGCATGGGTGAAGAACTTGCTGGA--CATGAGGTTGTACGTC 6198 Query 148243 TCAATAGCGTCTTCGATGTCGTCGCCGTGAATGCCCAGCGCGACGCGCATGAGCATGTGC 148302 || | | ||||| | | |||| || |||| || |||||||||| |||||| Sbjct 6199 TCGAGGACTCGGTCGATATTGCCGCCCCATATACCCACGGCAACGCGCATGATCATGTGT 6258 Query 148303 TGTGGTCGTTCGGC-AACTTGATTGTTGATCTTGAGAAGATATCCATTTTCGAGGGTTTT 148361 || || || || | | |||| || || |||||| | ||| | ||| || || || Sbjct 6259 TGAGGGCGCTCAACGATCTTG-CCGTCGAGCTTGAGCAAATAAGAACGTTCCAGTGTCTT 6317 Query 148362 GTAACCAAAGTACTTGTAATCAAAATCTAGCTCGTAAGCGATGGCCG 148408 | | ||||| |||| ||| | ||| || | || || |||||||| Sbjct 6318 GAAGCCAAAATACTGGTAGTTAAAGTCCCGGTCATAGATGATGGCCG 6364 >seq598 Length=71582 Score = 98.7 bits (108), Expect = 9e-16 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 |||||||| ||||| ||||||||| || || || ||| |||||||| ||||| | | Sbjct 1143 GACTCTTTCTGAATATTGTAGTCGGACAGAGTTCGACCATCCTCGAGCTGCTTACCAGCA 1084 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| || ||||||||||| || || ||||| || || || ||| ||| |||| Sbjct 1083 AAGATCAGGCGCTGTTGATCCGGGGGAATGCCCTCCTTGTCCTGAATCTTTGACTTCACA 1024 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || |||| || || ||||| | || | ||| || ||||||| || || Sbjct 1023 TTATCGATGGTGTCGGACGATTCGACTTCCAGAGTGATCGTCTTGCCAGTCAACGTCTTG 964 Query 132110 ATGAAAATCTGCAT 132123 | ||| || ||||| Sbjct 963 ACGAATATTTGCAT 950 >seq780 Length=34333 Score = 95.1 bits (104), Expect = 1e-14 Identities = 339/519 (65%), Gaps = 17/519 (3%) Strand=Plus/Plus Query 46758 GTGCCATGCGTTCGCAAAAAGGCCCAGTGGGCCATGAAGTGGATCGAGAGCGAGACCGCC 46817 || || ||| |||||||||| ||| | ||||| || |||||| || | | | | | Sbjct 30421 GTTCCTTGCATTCGCAAAAAAGCCGACTGGGCTATTCGCTGGATCCAGGACAAAAACTCG 30480 Query 46818 ACGCTGGCCGAGCGCATGGTGGCATTCGCGATAGTCGAAGGCGTGtttttttCGGGCAGT 46877 || | || | ||| |||| || || || ||||| ||| | || || || Sbjct 30481 TCGTTTGCTCAACGCTTGGTAGCCTTTGCTGCGGTCGAGGGCATCTTCTTCAGTGGTGCC 30540 Query 46878 TTTGCCGCCATTTTTTACATTAAAACCAAAGGCATAATGCCGGGCCTGACGTTCAGTAAC 46937 |||||| |||| || | | || | ||| ||||||| ||| |||| || ||| Sbjct 30541 TTTGCCTCCATCTTCTGGCTCAAGAAACGTGGCCTAATGCCTGGCTTGACCTTTTCCAAC 30600 Query 46938 GAGTTGATCTCGCGCGACGAAGGACTACACACGGACTTTGCGTGTCTCTATTACAAGACG 46997 || | || ||||| || || || | |||||||| ||||| |||||| |||| || Sbjct 30601 GAACTCATTTCGCGAGATGAGGGTTTGCACACGGATTTTGCCTGTCTCC--TACACT-CG 30657 Query 46998 CGCGTGAATGA----GAAATTAAACTCGGACACGATCC-TGAGCATGTTTAGGGAGGCGG 47052 | | | || | | | |||| || || ||| ||| ||| | | || || | Sbjct 30658 CACTTCAAAAACCGGGCCAGCAAACA-GGTCA---TCCATGA-CATCATCACCGATGCCG 30712 Query 47053 TGAGCATCGAAAAGGAGTTTTTTACTGCGGCGCTGCCCGTCGCCTTGCTGGGCATGAACG 47112 | | ||||||| | || ||| | || | || |||||| ||| || || |||||||||| Sbjct 30713 TCACCATCGAACAAGAATTTCTCACCGAAGCCCTGCCCTGCGCATTACTCGGCATGAACG 30772 Query 47113 CACAGTCTATGTGCGAATATATTGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGAC 47172 | | ||| | ||||| ||||| || || || || || | || | | || | Sbjct 30773 CCACCTTGATGAAGCAGTATATCGAGTTCGTTGCCGACCGCCTTCTAGT-CGCCCTGGGC 30831 Query 47173 AACCGAAATATTTTAATGCTCGT--AATCCGTTTGAGTTTATGAACAACATTTCGCTCGA 47230 || ||||| | || | |||| || || ||||| || ||| | ||||| ||||| | Sbjct 30832 AA-CGAAAAGGTGTACAGGTCGTCGAACCCCTTTGATTTCATGGAAAACATATCGCTAGG 30890 Query 47231 GGGCAAAACCAATTTTTTCGAGAAACGAGTCGGAGAGTA 47269 |||||| ||||| ||||| || ||||| ||||| || || Sbjct 30891 GGGCAAGACCAACTTTTTTGAAAAACGGGTCGGTGACTA 30929 >seq574 Length=30825 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 131932 CTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAATA 131991 ||| || || |||||||||||||||||||| || |||||||||||| || |||| | | Sbjct 26604 CTCCTTCTGGATGTTGTAGTCGCTCATGGTTCGGCCATCTTCGAGCTGCTTTCCGGCAAA 26663 Query 131992 GATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAACTG 132051 ||| || ||||| || || || || ||||| || ||||| ||| || || | | Sbjct 26664 GATGAGGCGCTGCTGGTCGGGGGGAATGCCCTCCTTATCCTGAATCTTGGACTTGACGTT 26723 Query 132052 TTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTAT 132111 || | || || | | |||||| || | || | || || || || || ||||| | Sbjct 26724 ATCGATGGTGTCAGAAGACTCCACCTCAAGGGTGATTGTCTTCCCCGTGAGGGTTTTGAC 26783 Query 132112 GAAAATCTGCAT 132123 ||| |||||||| Sbjct 26784 GAAGATCTGCAT 26795 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476604164027160