Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cerataphis_20brasiliensis_20yeast- like_20symbiont_20[genbank_20GCA_5F000372705.1_202013-04-22] 1,181 sequences; 25,465,455 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq677 174 2e-37 seq780 123 4e-22 seq1050 109 8e-18 >seq677 Length=7370 Score = 174 bits (192), Expect = 2e-37 Identities = 216/293 (74%), Gaps = 2/293 (1%) Strand=Plus/Minus Query 259894 CATGTCGCAGCA-GTTGTTCACCTCAGCGACGCCCACGCTCTTTAATGCCGGCACGCCGC 259952 |||||| ||||| ||| |||||| ||| |||| ||||| || || ||||||||||| | Sbjct 6186 CATGTC-CAGCAAGTTCTTCACCCATGCGTCGCCGACGCTGTTCAACGCCGGCACGCCTC 6128 Query 259953 GCCCGCAGAATTCGTCGTGCTTTCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATCT 260012 ||| |||||||||||| || | |||||||||| || ||||||||||||| Sbjct 6127 AGTGTCAGCTTTCGTCGTGCTTCCTCGTTGACATGAAGGAGGACAGCATCGAGGGCATCT 6068 Query 260013 ATGACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCG 260072 | |||||||||||| ||||| | ||||||||| ||||||||||||||| | || Sbjct 6067 ACGACACGCTCAAGACATGCGCCATGATCTCCAAGATGGCCGGCGGCATCGGGCTCAACG 6008 Query 260073 CACACAAGGTGCGCGCCGCGGGCGCCTACGTGGCGGGCACCAACGGCCAGTCCAACGGCC 260132 || | | || || | || | ||| | || ||||||||||| || ||||| Sbjct 6007 TGCATCGGATCCGTGCTACCGGTTCTTACATTGCCGGCACCAACGGGACTTCGAACGGTG 5948 Query 260133 TTGTGCCCATGCTTCGCGTTTTTAACGACACGGCGCGCTACGTCGACCAGTGC 260185 | | ||||||||||| || || ||| | ||||| ||||||||||||||| || Sbjct 5947 TCATTCCCATGCTTCGTGTCTTCAACAATACGGCCCGCTACGTCGACCAGGGC 5895 Score = 122 bits (134), Expect = 1e-21 Identities = 356/541 (66%), Gaps = 18/541 (3%) Strand=Plus/Minus Query 262878 CTGGGACTGGGACGCACTGCGGGCGTCGGTTCGAC-AGCATGGCCTGCGCAACTCGTTGC 262936 |||||| ||||| | || |||| | | | || | |||||||| | |||||| ||| Sbjct 5025 CTGGGAGTGGGAAACGCTACGGGAG-CAGATCAAGGAGCATGGCATACGCAACAGTCTGC 4967 Query 262937 TCGTGGCGCTCATGCCCACGGCCACGACGTCGCAGATCCTGGGCAACACCGAGGCGTTCG 262996 | || || | |||||| ||||||| |||||||||||||| ||||| | |||| |||| Sbjct 4966 TGGTAGCCCCCATGCCGACGGCCAGCACGTCGCAGATCCTCGGCAATAACGAGTGCTTCG 4907 Query 262997 AGGTCATCACGAGCAACATCTACACGCGCCGCGTGCTCTCGGGCGACTTTACCGTGGTCA 263056 || |||| |||||| ||| ||| |||||||| ||||||| || ||||||| Sbjct 4906 AGCCTTACACGTCCAACATTTACCAGCGACGCGTGCTGGCGGGCGAGTTCCAGGTGGTCA 4847 Query 263057 ACCGCCACCTGGTCAAGCGCATGGTGGCGCGCGGCCTGTGGACG--CCCGACTTTCGCGA 263114 ||| | ||| ||||| | |||| | ||| | ||| || | ||| | | Sbjct 4846 ACCCCTGGCTGCTCAAGGACCTGGTTGACTTGGGCTTATGGTCGGACTCGA--TGAAAAA 4789 Query 263115 CCGGCTCATTGCGGCACAGGGCTCGGTGCAGGGCTTTGACGACGAGGAGGTGCCGCCCGA 263174 ||| ||||||||| | | || || | ||| | | | || | || | || Sbjct 4788 CCGAATCATTGCGGAAAACGGGTCCATCCAGAACATCCCCAAC------ATCCCTGCTGA 4735 Query 263175 TCTCAAGGCTCTCTTCAAGACCGTGTGGGAG-GTGCCCAAC--CGGGTGACCATTGATAT 263231 ||||||| || | |||||| || |||||| | | || | | |||| | | || Sbjct 4734 CGTCAAGGCACTTTACAAGACGGTCTGGGAGATTTCGCAGCGACAGGTG---GTGCAGAT 4678 Query 263232 GGCGGCCGACCGCGCGCCCTATGTCGACCAGAGCCAGTCGCTCAACCTGTACCTCGCCGA 263291 |||||||||||||| ||| | |||||||| ||||||||||||| | || | || Sbjct 4677 GGCGGCCGACCGCGGTGCCTTTATCGACCAGTCCCAGTCGCTCAACATCCACATGAAAGA 4618 Query 263292 CCCGACGGCCGAGAGCATCACGTCGATGCACGCCTATGCGTGGCGTCGCGGCCTCAAGAC 263351 |||| || | | ||||| ||||| || ||| | || ||||| || Sbjct 4617 CCCGTCGATGGGCAAAATCACCAGCATGCATTTTACTGGCTGGAAGCTGGGGCTCAAAAC 4558 Query 263352 TGGCATGTACTATCTGCGCACCCGGCCCGCTGCCAACGCCATTCAATTCACCGTCGATCA 263411 ||||||||||| ||||| || | | | || || |||| || ||||| || || || Sbjct 4557 CGGCATGTACTACCTGCGTACGCAGGCGGCGGCGGCGCCCATCCAGTTCACGGTAGACCA 4498 Query 263412 G 263412 | Sbjct 4497 G 4497 >seq780 Length=34333 Score = 123 bits (136), Expect = 4e-22 Identities = 208/296 (70%), Gaps = 5/296 (2%) Strand=Plus/Plus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| ||| |||||||| || ||||| ||||||||||||||||| |||||||| |||| | Sbjct 30016 GATTTGGCAAATGTAC-AAGAAGGCAGAGGCCTCCTTTTGGACAGCCGAGGAAATCGATC 30074 Query 1455835 TCGGCGCCGACACGGTCCACTGGGTGT--CGC-TGAGCGACGACGAGCGCCATTTCATCA 1455891 || | ||| | | ||||| ||| ||| || ||||| | || | Sbjct 30075 TCTCCAAGGACTTGCACGACTGGAACAACCGCCTGAATGATGACGAAAAGTACTTTGTTT 30134 Query 1455892 AGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGC 1455951 ||| |||| ||||||||| |||||| || |||||||| ||| ||| ||| | Sbjct 30135 CCCACATCCTGGCCTTTTTT-GCCGCCTCGGACGGCATCGTCAACGAAAACTTGGTTGAG 30193 Query 1455952 CGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCC 1456011 || || | ||||| || | || ||||| |||| || ||||| || |||||| Sbjct 30194 CGGTTCAGCGGCGAGGTTCAGATCCCCGAGGCCCGTTGCTTCTACGGATTTCAGATCATG 30253 Query 1456012 ATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGA 1456067 || || ||||||||||| || || ||||| ||||||||||| || || ||||||| Sbjct 30254 ATGGAGAACATCCACTCCGAGACATACTCCCTCCTGATCGATACATATATCAAGGA 30309 Score = 93.3 bits (102), Expect = 6e-13 Identities = 179/259 (69%), Gaps = 4/259 (2%) Strand=Plus/Plus Query 1456523 ATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGGCG 1456582 |||||| ||| |||||| ||||| |||| ||| ||| ||| | ||||| || Sbjct 30697 ATCATCACCGATGCCGTCACCATCGAACAAGAATTTCTCACCGAAGCCCTGCCCTGCGCA 30756 Query 1456583 CTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCGCC 1456642 | ||||||||||||||||| | ||| ||||| || | | || || |||||||||| Sbjct 30757 TTACTCGGCATGAACGCCACC-TTGATGAAGCAGTATATCG-AGTTCGTTGCCGACCGCC 30814 Query 1456643 TGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGGATG 1456702 | || | || || ||| | || ||| ||| || || | ||||| || | ||| Sbjct 30815 TTCTAGTCGCCCTGGGCAAC-GAAAAGGTGTACAGGTCGTCGAACCCCTTTGATTTCATG 30873 Query 1456703 GAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCGT-GGCGAGTACGCC 1456761 || || ||||| | |||||||||||||||||| || || || || || ||| Sbjct 30874 GAAAACATATCGCTAGGGGGCAAGACCAACTTTTTTGAAAAACGGGTCGGTGACTACCAG 30933 Query 1456762 AAGGCCGGCGTCACCGCCA 1456780 |||||||| |||| |||| Sbjct 30934 AAGGCCGGTGTCATGGCCA 30952 >seq1050 Length=13000 Score = 109 bits (120), Expect = 8e-18 Identities = 163/232 (70%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 || ||||||||| | ||||| || || ||| |||| | | | || ||| || Sbjct 9563 ATTTACAAGGTGTTGAAGCAAGTACATCCCGATACCGGAGTGTCGTCG------AAGGCC 9616 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||| ||||||||| || ||||||||||| |||| ||||||| | |||| | | Sbjct 9617 ATGAGCATCATGAACAGCTTCGTCAACGACATTTTCGAACGCATCGCCGCCGAATCTAGC 9676 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 || ||||| | || ||||||||| || || || || || |||||||||||||| Sbjct 9677 CGTCTGGCCCACTACAACAAGCGTTCTACCATTACCAGTCGGGAAATCCAGACCGCCGTC 9736 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || || | ||| |||||| |||||| |||||||||| ||| || |||| Sbjct 9737 CGTCTTCTGTTGCCCGGCGAGTTGGCCAAGCACGCCGTCAGCGAAGGGACCA 9788 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177697290379322