Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cerataphis_20brasiliensis_20yeast- like_20symbiont_20[genbank_20GCA_5F000372705.1_202013-04-22] 1,181 sequences; 25,465,455 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq780 105 9e-18 >seq780 Length=34333 Score = 105 bits (116), Expect = 9e-18 Identities = 223/332 (67%), Gaps = 3/332 (1%) Strand=Plus/Minus Query 39839 GTTTCTATAGCATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATT 39898 ||||| |||||||| |||||||| | || | || || | ||||||||| || Sbjct 30348 GTTTCAATAGCATTGAAGAGATAGGTCCGCTGGGCATTCTCCTTGATATATGTATCGATC 30289 Query 39899 AACAGACTATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACAT 39958 | || || | || || |||||||| || ||| |||||||||||||| || || Sbjct 30288 AGGAGGGAGTATGTCTCGGAGTGGATGTTCTCCATCATGATCTGAAATCCGTAGAAGCAA 30229 Query 39959 CTTGCTTCAGTAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATT 40018 | || || | || || ||||| | || | || |||| ||||| || || || Sbjct 30228 CGGGCCTCGGGGATCTGAACCTCGCCGCTGAACCGCTCAACCAAGTTTTCGTTGACGATG 30169 Query 40019 CCATCACTAGCGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTC 40078 || || ||||||||||| |||| | || || ||| || ||||| || || Sbjct 30168 CCGTCCGAGGCGGCAAAAAAGGCCAGGATGTGGGAAACAAAGTACTTTTCGTCATCATTC 30109 Query 40079 AAT---TTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAAC 40135 | || |||||||| | | || || || | ||| | ||| || ||||||||||| Sbjct 30108 AGGCGGTTGTTCCAGTCGTGCAAGTCCTTGGAGAGATCGATTTCCTCGGCTGTCCAAAAG 30049 Query 40136 GACGCCTCTGCCTTTTTGTACATGTTCCATAT 40167 || ||||||||||| |||||||| | ||| || Sbjct 30048 GAGGCCTCTGCCTTCTTGTACATTTGCCAAAT 30017 Score = 91.5 bits (100), Expect = 2e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 39638 CCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTT 39697 |||||||||| ||| | |||||| ||||| || | ||||||||||| ||||| || Sbjct 30623 CCCTCATCTCGCGAAATGAGTTCGTTGGAAAAGGTCAAGCCAGGCATTAGGCCACGTTTC 30564 Query 39698 TTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAAT 39757 |||||||| || |||| ||||| | ||| ||||||||||| || || || ||||| Sbjct 30563 TTGAGCCAGAAGATGGAGGCAAAGGCACCACTGAAGAAGATGCCCTCGACCGCAGCAAAG 30504 Query 39758 GCAAC 39762 || || Sbjct 30503 GCTAC 30499 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686898659508840