Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cerataphis_20brasiliensis_20yeast- like_20symbiont_20[genbank_20GCA_5F000372705.1_202013-04-22] 1,181 sequences; 25,465,455 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq677 194 2e-44 seq686 105 8e-18 >seq677 Length=7370 Score = 194 bits (214), Expect = 2e-44 Identities = 647/993 (65%), Gaps = 34/993 (3%) Strand=Plus/Plus Query 110706 GGTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGG 110765 |||| ||||| | ||||| || || ||||| || ||||| || | ||| || | ||| Sbjct 4883 GGTAAATGTTGGACGTGTAAGGCTCGAAGCACTCGTTATTGCCGAGGATCTGCGACGTGC 4942 Query 110766 AGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTT 110825 ||| || ||||| || || | || |||||||| || | || | ||||||||| | | Sbjct 4943 TGGCCGTCGGCATGGGGGCTACCAGCAGACTGTTGCGTATGCCATGCTCCTTGATCTGCT 5002 Query 110826 CCTTGAGAACATCCCAGTCGTAGTTGAGCTT----GGTTTCACCTTCCCACATGTCAAAC 110881 || || ||||| || || |||| || |||||||||| ||||||||||| Sbjct 5003 CCCGTAGCGTTTCCCACTCCCAG---AGCTCTGAAGGCTTCACCTTCC-ACATGTCAAAC 5058 Query 110882 TGAAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCA 110941 || ||||| || | ||||| || || |||| ||| | |||| |||| | | Sbjct 5059 TGGAGCACGCCCTCCGACGCCGGCGATCCCTTAAACGACGAGTAGGGCCCTTCGCTCTTG 5118 Query 110942 GCCAATTCACAGCTCGCCTC-CAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATT 111000 |||| || || | | | | || || ||||| || |||||||| ||||| | || Sbjct 5119 GCCAGCTC-CATCGAGGCACTCAAGGCGGCGTGGTAGATGGTTTCGAAGATTTGCTGGTT 5177 Query 111001 CATCTCCTTGGCTTCATCTGAATCAAA-----TGCGTAGCGGCACAAAATAAATACATCC 111055 | |||| ||| || || ||||| |||| || | || |||| |||| Sbjct 5178 TAGCTCCCGGGCCTCCGGAGACTCAAACGGCATGCGGAGAGCCAGAAAAG-----CATCG 5232 Query 111056 GCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTC 111115 || || || || ||||||| |||||| || | ||| ||||| || || || || Sbjct 5233 GCCAGGCCCTGGACACCCACACCAATCGGCCGGTGCCGCATGTTGCTGTTGCGGGCCTCT 5292 Query 111116 TCAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTG 111175 ||||| || ||| || ||| |||| | || || || | |||| || || Sbjct 5293 TCAACTGGGTAATGGTTGACGTCGATGATCCTATTGAGGTTACGGACGACAACCTGCGTC 5352 Query 111176 ATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTG---ACATACTTTGGA 111232 | || || || || | | || | || || ||||| | ||| | || Sbjct 5353 ACCTCGTGGAGCTTCTGGAAGTCGTAGCAGCC---CTGTTCATAGTCGACAAAGGCAGGC 5409 Query 111233 AGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATT 111292 ||||| | ||| |||| |||||| || || || || | | |||||| | ||| Sbjct 5410 AGGGCTAGTGAGGCCAGATTGCAGACGGCGACTTCGTCAGGTGCCGAGTACTCGACGATT 5469 Query 111293 TCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTG 111352 || || || | ||| |||||| ||| || |||| |||||||| |||||||| |||| Sbjct 5470 TCCGTGCAAAGGTTCGAACTCCGAATGGTGCCCAGGTTCTTTTGATTACTCTTGCGGTTG 5529 Query 111353 CACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCC 111412 || |||||||| ||||| |||| | ||||| |||||||||| || || |||| Sbjct 5530 CAGTGGTCCTTGTACAGCATAAAGGGATTGCCCGTTTCCGTCTGTGCTTCCAGGATAGAA 5589 Query 111413 TTCCAAA-CATCGGCGGCTGGTACAATGGCGTT-GGCC-CGTCCCTCCGCCTCGTACTTT 111469 | ||| | | || | | | | || | | | |||| || ||||| |||||||||| Sbjct 5590 TACCAGAGCTTCTGAGCCCG---CACCGTCTTGCGGCCACGGCCCTCGCGCTCGTACTTT 5646 Query 111470 GTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTT-GTCTGG 111528 ||| || || ||||| || ||||| ||||| || || || || || || || Sbjct 5647 TCGTACAGAGCCTCAAATTCATCACCGTAGCAGTCGGCCAGGCCGGG-GCATTCGTTGGG 5705 Query 111529 ACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCA 111588 || | || | ||| | || || ||| || ||||||||||| ||||| |||||||| Sbjct 5706 GCACATGAGCGTCCAATCGCCGTTTTTCTCCACGCGCTTCATGAACAGGTCCGGAATCCA 5765 Query 111589 CAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTC 111648 ||||| ||||| || | |||| |||| || | || ||||| || | || Sbjct 5766 CAGGGCCAGGAAGAGGTCGCGGGCCCGAACCTCCTCCTTGCCATGGTTCTTGCGCAGATC 5825 Query 111649 AAGGAACTCCATGATATCCGCGTGCCATGGCTC 111681 || ||||| | | ||| |||||||| ||||| Sbjct 5826 CAGAAACTCAAACACATCGGCGTGCCACGGCTC 5858 >seq686 Length=19048 Score = 105 bits (116), Expect = 8e-18 Identities = 219/320 (68%), Gaps = 7/320 (2%) Strand=Plus/Plus Query 11539 AAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGG 11598 |||||||||||| |||| || | |||||| | ||| |||| || || || ||| Sbjct 8732 AAAGCCATCCATTTCGGCAAGGATTTGATTCAGTGTGGCCTCTCGTTCCTCGTTGCCTGT 8791 Query 11599 CATACCACCAGCACTG---CGTTG-CTTGCCCACCGCATCAATCTCATCAATGAAGACAA 11654 ||| | || || || | | | |||||| | || ||||||||||| ||||||| | Sbjct 8792 -ATAGCCCCGGCCTTGTACCCTGGACTTGCCAATAGCGTCAATCTCATCGATGAAGATTA 8850 Query 11655 TACATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACAC 11714 |||| || ||| | ||| | | | || | ||||| || || | |||||||| Sbjct 8851 TACAAGGAGCATTCTTGCGACCCTCTGCGAACAAGTCGCGTACTCTGGACGAACCCACAC 8910 Query 11715 CAACAAACATCTCCACAAAGTTTGCGGCAGAG-CACTGGATGAATGGGACATTTGATTCA 11773 | ||||||||||||| ||| | | || | | ||| | || | ||| ||| || Sbjct 8911 CCACAAACATCTCCATAAACTCGGACCCACTGACGCTGAAA-AAGGCGACCCCTGACTCT 8969 Query 11774 CCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCG 11833 || || |||| ||| ||||| ||||| ||||| |||||| || ||||||| || Sbjct 8970 CCAGCCGTGGCCTTGGCTAGGAGTGTCTTGCCCGTGCCTGGCGGTCCGGCGAGAATAGCA 9029 Query 11834 CCTCGGGGGATCTTGGCACC 11853 || || |||||||||||||| Sbjct 9030 CCACGCGGGATCTTGGCACC 9049 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628022728677600