Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cerataphis_20brasiliensis_20yeast- like_20symbiont_20[genbank_20GCA_5F000372705.1_202013-04-22] 1,181 sequences; 25,465,455 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq677 224 1e-53 seq686 96.9 4e-15 seq283 89.7 6e-13 >seq677 Length=7370 Score = 224 bits (248), Expect = 1e-53 Identities = 879/1366 (64%), Gaps = 37/1366 (3%) Strand=Plus/Plus Query 118155 AACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTCGTGTATGGCTCAAAGCACTCA 118214 ||||| ||||| || ||||| | | || || |||| |||||| ||||| |||||||| Sbjct 4858 AACTCGCCCGCCAGCACGCGTCGCTGGTAAATGTTGGACGTGTAAGGCTCGAAGCACTCG 4917 Query 118215 TTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTA 118274 || || || | ||| || | ||| ||| || |||||||| || | || || ||||| Sbjct 4918 TTATTGCCGAGGATCTGCGACGTGCTGGCCGTCGGCATGGGGGCTACCAGCAGACTGTTG 4977 Query 118275 CGGAGACCCTTTTCCCTAATGCGTTCCTTGAGAGCGTCCCAGTCGTAGTTGAGCTTTGT- 118333 || | || | ||| | || | ||| || | ||||| || || |||| || Sbjct 4978 CGTATGCCATGCTCCTTGATCTGCTCCCGTAGCGTTTCCCACTCCCAG---AGCTCTGAA 5034 Query 118334 --CTCCCCCTGCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAAT 118391 || | ||| |||||| ||||||||||| | || | ||||| |||||||||| ||| Sbjct 5035 GGCTTCACCTTCCACATGTCAAACTGGAGCACGCCCTCCGACGCCGGCGATCCCTTAAAC 5094 Query 118392 GTCTCATATGGGCCCTCAACCTCCGCCAATTCG---GAGCTCGC-CTCGAGGGCTGCGTG 118447 | | || || || || || |||| || ||| || ||| ||| | ||||| Sbjct 5095 GACGAGTAGGGCCCTTCGCTCTTGGCCAGCTCCATCGAG---GCACTCAAGG-CGGCGTG 5150 Query 118448 ATACATTGTTTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAG 118507 || || ||||| || || | || | || |||||| || ||||||| | Sbjct 5151 GTAGATGGTTTCGAAGATTTGCTGGTTTAGCTCCCGGGCCTCCGGAGACTCAAACGGCAT 5210 Query 118508 TCGGCACAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCT 118567 ||| | ||| |||| || || || |||||||| | ||||| || || || | Sbjct 5211 GCGGAGAGCCAGAAAAGCATCGGCCAGGCCCTGGACACCCACACCAATCGGCCGGTGCCG 5270 Query 118568 CATATTAGACTTCCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAG 118627 ||| || || || || || || || ||| || ||||| | |||||| || Sbjct 5271 CATGTTGCTGTTGCGGGCCTCTTCAACTGGGTAATGGTTGACGTCGATGATCCTATTGAG 5330 Query 118628 ATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTC 118687 || | |||||||| || | || || ||||| | | | || | | || || Sbjct 5331 GTTACGGACGACAACCTGCGTCACCTCGTGGAGCTTCTGGAAGTCGTAGCAGCC---CTG 5387 Query 118688 TTCATTG---ACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATC 118744 ||||| | ||| | ||| ||||| | ||| |||||||| || || | | || || Sbjct 5388 TTCATAGTCGACAAAGGCAGGCAGGGCTAGTGAGGCCAGATTGCAGACGGCGACTTCGTC 5447 Query 118745 CTTATCAGTGTACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTT 118804 | | |||||| | ||||||||||| | ||| |||||| ||||||||||| ||| Sbjct 5448 AGGTGCCGAGTACTCGACGATTTCCGTGCAAAGGTTCGAACTCCGAATGGTGCCCAGGTT 5507 Query 118805 CTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTC 118864 ||||||||| ||| ||| || |||||||| ||||| | || | ||||| || Sbjct 5508 CTTTTGATTACTCTTGCGGTTGCAGTGGTCCTTGTACAGCATAAAGGGATTGCCCGTTTC 5567 Query 118865 CGTTTGGGACTTGAGAATAGCCTTCCAGA-CATCGGCAGCTGGCACAGTGGCGTTGGCTC 118923 ||| || | | || |||| | ||||| | || | ||| |||| || | | | | Sbjct 5568 CGTCTGTGCTTCCAGGATAGAATACCAGAGCTTCTG-AGCCCGCACCGTCTTGCGGCCAC 5626 Query 118924 GCCCCTCTTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGA 118983 | ||||| |||||||||| ||| || || ||||| || ||||| | || | | Sbjct 5627 GGCCCTCGCGCTCGTACTTTTCGTACAGAGCCTCAAATTCATCACCGTAGCAGTCGGCCA 5686 Query 118984 GCCCTGGTGCCTT-ATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTC 119042 | || || || || | ||||| | ||| | ||| | || | ||| || |||||| Sbjct 5687 GGCC-GGGGCATTCGTTGGGGCACATGAGCGTCCAATCGCCGTTTTTCTCCACGCGCTTC 5745 Query 119043 ATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCC 119102 ||||| ||||| || ||||| || ||| |||||| || || ||| | || || | Sbjct 5746 ATGAACAGGTCCGGAATCCACAGGGCCAGGAAGAGGTCGCGGGCCCGAACCTCCTCCTTG 5805 Query 119103 CCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTAC 119162 || || || |||| |||| ||| || | | ||| ||||||||||| |||| ||| Sbjct 5806 CCATGGTTCTTGCGCAGATCCAGAAACTCAAACACATCGGCGTGCCACGGCTCCAAGTAT 5865 Query 119163 ACCGCGA------TTGACCCCTTACGACGACCAGCCTGGTTTACATACCTCGCAGTGGCG 119216 | || | || || ||| | | || |||||| || || | || || | Sbjct 5866 ATGGCAAAGGCACCTGGCCGCTT--GTTG-CCGCCCTGGTCGACGTAGCGGGCCGTATTG 5922 Query 119217 TTAAATACACGAAGCATTGGAATGATACCATCGGATTGGCCATTTGTCCCCCGAATACGA 119276 || || ||||||||||| ||||||| ||| | || || || || || ||| | Sbjct 5923 TTGAAGACACGAAGCATGGGAATGACACCGTTCGAAGTCCCGTTGGTGCCGGCAATGTAA 5982 Query 119277 GACTTATTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATT 119336 || | || | || || | || | || || || || ||| ||| ||||| Sbjct 5983 GAACCGGTAGCACGGATCCGATGCACGTTGAGCCCGATGCCGCCGGCCATCTTGGAGATC 6042 Query 119337 TGCGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATG 119396 ||||| | |||| || ||||||| || ||||| ||| |||| | | | | Sbjct 6043 ATGGCGCATGTCTTGAGCGTGTCGTAGATGCCCTCGATGCTGTCCTCCTTCATGTCAACG 6102 Query 119397 AGGAAGCAGCTCGACATTTGAGGCCTGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCG 119456 |||||||| ||| | ||| | || || || |||||||| || || || | ||| Sbjct 6103 AGGAAGCACGACGAAAGCTGACACTGAGGCGTGCCGGCGTTGAACAGCGTCGGCGACGCA 6162 Query 119457 TGGATGAACATACCTTG--GGACATCTTGTCGTAGGTCTCCAAGAC 119500 ||| ||| | | |||| |||||| || ||| ||||| | ||| Sbjct 6163 TGGGTGA--AGAACTTGCTGGACATGAGGTTGTACGTCTCGAGGAC 6206 >seq686 Length=19048 Score = 96.9 bits (106), Expect = 4e-15 Identities = 217/321 (68%), Gaps = 9/321 (3%) Strand=Plus/Plus Query 14152 AAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGG 14211 |||||||||||| || | | || |||||| | || || ||||| || || || | Sbjct 8732 AAAGCCATCCATTTCGGCAAGGATTTGATTCAGTGTGGCCTCTCGTTCCTCGTT-GCCTG 8790 Query 14212 CATACCACCCGCACTG---CGTTG-CTTACCGACGGCGTCAATTTCATCGATGAAAACGA 14267 ||| | || || || | | | ||| || | |||||||| ||||||||||| | | Sbjct 8791 TATAGCCCCGGCCTTGTACCCTGGACTTGCCAATAGCGTCAATCTCATCGATGAAGATTA 8850 Query 14268 TACATGGTTGATTTTCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACAC 14327 |||| || ||| | || | || | || | || || ||||| | ||| |||| Sbjct 8851 TACAAGGAGCATTCTTGCGACCCTCTGCGAACAAGTCGCGTACTCTGGACGAACCCACAC 8910 Query 14328 CCACAAACATCTCCACAAAATTGG--CGGCGGAACATTGGATGAAGGGGACGTTAGATTC 14385 ||||||||||||||| ||| | || | | || | || |||| ||| || || Sbjct 8911 CCACAAACATCTCCATAAACTCGGACCCACTGACGCT--GAAAAAGGCGACCCCTGACTC 8968 Query 14386 ACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGGTTTCCCTGCGAGAAGGGC 14445 || || |||| ||| ||||| ||||| ||||| ||||| || ||||||| || Sbjct 8969 TCCAGCCGTGGCCTTGGCTAGGAGTGTCTTGCCCGTGCCTGGCGGTCCGGCGAGAATAGC 9028 Query 14446 ACCACGTGGGATCCTGGCACC 14466 |||||| |||||| ||||||| Sbjct 9029 ACCACGCGGGATCTTGGCACC 9049 >seq283 Length=63202 Score = 89.7 bits (98), Expect = 6e-13 Identities = 168/246 (68%), Gaps = 6/246 (2%) Strand=Plus/Minus Query 179062 GCATCTTTGCCACCCATGAGACGCGTCCCAAATTGACCACATGGCTCAAGGAGATTGATA 179121 ||||| ||| ||| |||| || | ||||| | || | ||||||||| ||||| Sbjct 14914 GCATCAGAGCCTCCCTTGAGTCGGGAACCAAAGTTGCCGCTTGGCTCAAGACAATTGACG 14855 Query 179122 TTGTTTGAACCCATGTAGTCATTGGCCAACTTGACAATCGTATCCGCGAGGGAGACTTCA 179181 || || || || | |||| | ||||| || ||| || | | || ||| ||||| Sbjct 14854 TTATTCGATCCAACAAAGTCTTGGGCCAGGCCGATAATGGTCTGCTGCAGTGAGGCTTCA 14795 Query 179182 CCGTGATGGTAAGCCGACTTGTCCGCCACATATGCCGCCAACTGCGCCACCTTCATCTCA 179241 ||||||||||| |||| || |||| || || |||| | | | |||||||| | Sbjct 14794 CCGTGATGGTATGCCGTCTGTTCCGATACGTAACCCGCTAGTTCCACCACCTTCCT---G 14738 Query 179242 TCCTTGA---GGTTCTTGTGGAAGCACGCATACATCACCTTTCTTTGTGAAGGCTTGAGG 179298 ||||||| ||| | ||| |||||||| || ||||| | ||| |||||||| | Sbjct 14737 TCCTTGACCGCGTTTCGCTTGAAACACGCATAGATGACCTTGCGTTGACCAGGCTTGAAG 14678 Query 179299 CCGTCG 179304 |||||| Sbjct 14677 CCGTCG 14672 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618426070350360