Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cerataphis_20brasiliensis_20yeast- like_20symbiont_20[genbank_20GCA_5F000372705.1_202013-04-22] 1,181 sequences; 25,465,455 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq677 259 5e-64 seq780 109 6e-19 seq283 93.3 5e-14 >seq677 Length=7370 Score = 259 bits (286), Expect = 5e-64 Identities = 426/598 (71%), Gaps = 16/598 (3%) Strand=Plus/Minus Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACA-CG--CGTGTCCGTGAGACGT 53249 |||||||||| ||| ||||||| | || | || | | | || || |||| ||||||| Sbjct 6250 TCATGCGCGTTGCCGTGGGTAT--ATGGGG-CGGCAATATCGACCGAGTCCTCGAGACGT 6194 Query 53250 ACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTA 53309 || || | ||| | |||| ||| || || || |||| || ||||||||||| || | Sbjct 6193 ACAACCTCATGTCCAGCAAGTTCTTCACCCATGCGTCGCCGACGCTGTTCAACGCCGGCA 6134 Query 53310 CGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACG 53369 || ||| |||| | ||| |||||||| || | |||||||| ||| ||||| | Sbjct 6133 CGCCTCAGTGTCAGCTTTCGTCGTGCTTCCTCGTTGACATGAAGGAGGACAGCATCGAGG 6074 Query 53370 GCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTA 53429 |||||||||| ||||||||| || ||| ||||||||| | | || || ||||| Sbjct 6073 GCATCTACGACACGCTCAAGACATGCGCCATGATCTCCAAGATGGCCGGCGGCATCGGGC 6014 Query 53430 TCCAC-TGC-TCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGC 53487 || || ||| ||| | ||||||| | ||| | || || || ||||| | | Sbjct 6013 TCAACGTGCATCGGA--TCCGTGCTACCGGTTCTTACATTGCCGGCACCAACGG-GACTT 5957 Query 53488 CGAT-GGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGG 53546 ||| || || | || ||||| || ||||||||||| |||||||| |||||| |||||| Sbjct 5956 CGAACGGTGTCATTCCCATGCTTCGTGTCTTCAACAATACGGCCCGCTACGTCGACCAGG 5897 Query 53547 GTGGTGGGAAGCG-CAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATT 53605 | || ||||| | ||| | | || ||||| ||| | ||||||||||||||||| | Sbjct 5896 GCGGCAACAAGCGGCCAGGTGCCTTT-GCCATATACTTGGAGCCGTGGCACGCCGATGTG 5838 Query 53606 ATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTG 53665 | |||||||| || ||||| ||| || || | || ||| | || ||| ||||| Sbjct 5837 TTTGAGTTTCTGGATCTGCGCAAGAACCATGGCAAGGAGGAGGTTCGGGCCCGCGACCTC 5778 Query 53666 TTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGG 53725 || || ||||||||||||||||| |||||| | |||||||| ||| || ||| Sbjct 5777 TTCCTGGCCCTGTGGATTCCGGACCTGTTCATGAAGCGCGTGGAGAAAAACGGCGATTGG 5718 Query 53726 TACCTGATGTGCCCGAACGAGTGCCCCGGCCT-CCAGGGTGTCTACGGTGAGGAGTTT 53782 || |||||||| ||||| ||||||||||| | | || ||||||||| || ||| Sbjct 5717 ACGCTCATGTGCCCCAACGAATGCCCCGGCCTGGCCGACTG-CTACGGTGATGAATTT 5661 Score = 132 bits (146), Expect = 5e-26 Identities = 551/848 (65%), Gaps = 30/848 (4%) Strand=Plus/Minus Query 55097 GACTTTGACAAGCTTCACGAAGTGACGCGTGTTGTGACTCGGAACCTGAACCGGGTCATC 55156 ||||| | ||||| ||||| ||||||| ||||| || ||||| || || ||||| Sbjct 5375 GACTTCCAGAAGCTCCACGAGGTGACGCAGGTTGTCGTCCGTAACCTCAATAGGATCATC 5316 Query 55157 GACAAGAATTACTACCCGACTGAAGCGGCGCGCAAGTCCAACCTCCGGCACCGGCCCATC 55216 ||| || | ||||| ||||| ||| ||||| |||| | ||||||||||| || Sbjct 5315 GACGTCAACCATTACCCAGTTGAAGAGGCCCGCAACAGCAACATGCGGCACCGGCCGATT 5256 Query 55217 GCCATCGGTGTACAGGGCTTGGCCGACATCTTCATGATGCTCGGATTGCCCTTCGA--CT 55274 | | ||||| |||||| ||||||| || || ||| | |||| || || || Sbjct 5255 GGTGTGGGTGTCCAGGGCCTGGCCGATGCTTTTCTGGCTCTCCGCATGCCGTTTGAGTCT 5196 Query 55275 CGGAACCTGCTCGAGAAATTAACCAGGACATCTTCAGTCGCATCTACTTTGCAGCGCTCG 55334 | | | || || || | |||||| | |||||| ||||||| || || || | Sbjct 5195 CCGGAG--GCCCGGGAGCTAAACCAGCAAATCTTCGAAACCATCTACCACGCCGC-CTTG 5139 Query 55335 AG-GAGTCGTGTCATCTGGCTATGAGCGAGGGGACCTACGAGACGTTCCGTGATTCGCCA 55393 || | ||| | ||||| | |||||| ||| ||||| | |||| | ||||| Sbjct 5138 AGTGCCTCGATGGAGCTGGCCAAGAGCGAAGGGCCCTACTCGTCGTTTAAGGGATCGCCG 5079 Query 55394 GCTGACAAGGGACTTCTCCAGTTCGATCTATGG---GGCAAGTCT---GACCCCATG--- 55444 || |||| | |||||||| || | ||| | ||| || || | | | Sbjct 5078 GCGTCGGAGGGCGTGCTCCAGTTTGACATGTGGAAGGTGAAGCCTTCAGAGCTCTGGGAG 5019 Query 55445 TTTGACAAGTTGAAGCATGACATTCACTTGTGGGGCCTACGCAACTCCCTGCTCGTGGCG 55504 | || | | | | | | || | | ||| |||||||| ||||| || || Sbjct 5018 TGGGAAACGCTACGGGAGCAGATCAAGGAGCATGGCATACGCAACAGTCTGCTGGTAGCC 4959 Query 55505 CCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAACAACGAGGCGTTCGAGCCGTAC 55564 || ||||| || || ||| | |||||| | ||||| |||||| |||||||| ||| Sbjct 4958 CCCATGCCGACGGCCAGCACGTCGCAGATCCTCGGCAATAACGAGTGCTTCGAGCCTTAC 4899 Query 55565 ACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAGTTTGTCATGATCAACAAGCAC 55624 ||| ||||||| |||| ||| || || || || ||||| || ||||| Sbjct 4898 ACGTCCAACATTTACCAGCGACGCGTGCTGGCGGGCGAGTTCCAGGTGGTCAACCCCTGG 4839 Query 55625 CTCGTCAAGGACCTGCAGAAGATCAACAAGTGGA---ACCCGCAGATCAAGACGGATATT 55681 || ||||||||||| | | | ||| || || || || || || | Sbjct 4838 CTGCTCAAGGACCTGGTTGACTTGGGCTTATGGTCGGACTCGATGAAAAAC-CGAATCAT 4780 Query 55682 GTGCGGAACGGGGGGTCCGTCCAGAA--TCTGGAGATTCCTCTGC-GTC-TCAAGGAGAT 55737 ||||||| ||| ||| ||||||| || | ||| |||| | | |||||| | Sbjct 4779 -TGCGGAAAACGGG-TCCATCCAGAACATCCCCAACATCC-CTGCTGACGTCAAGGCACT 4723 Query 55738 TTACCGGACGGTGTGGGAGATTCCACAGA-AGAGTCTGATTGACATGAGTGCTGATCGTG 55796 |||| |||||| ||||||||| | ||| | || || | | ||| || || || | Sbjct 4722 TTACAAGACGGTCTGGGAGATTTCGCAGCGACAGG-TGGTGCAGATGGCGGCCGACCGCG 4664 Query 55797 GTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCCTTCACTGGCCA 55856 |||| | ||||||||||||||||| || |||||| |||| | | || || ||| || Sbjct 4663 GTGCCTTTATCGACCAGTCCCAGTCGCTCAACATCCACATGAAAGACCCGTCGATGGGCA 4604 Query 55857 AGTTGAGCTCGATGCACTTTTAC-GGGTGGAAGAAGGGACTCAAGACGGGTATGTACTAT 55915 | | | | ||||| |||||| || |||||| ||| ||||| || || |||||||| Sbjct 4603 AAATCACCAGCATGCA-TTTTACTGGCTGGAAGCTGGGGCTCAAAACCGGCATGTACTAC 4545 Query 55916 CTGCGGAC 55923 ||||| || Sbjct 4544 CTGCGTAC 4537 >seq780 Length=34333 Score = 109 bits (120), Expect = 6e-19 Identities = 304/458 (66%), Gaps = 20/458 (4%) Strand=Plus/Minus Query 74463 TAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATC 74522 || ||||||||||| |||||||||||||||||||| || | | ||| ||||| ||||| Sbjct 30929 TAGTCACCGACCCGTTTTTCAAAAAAGTTGGTCTTGCCCCCTAGCGATATGTTTTCCATG 30870 Query 74523 CAGTCGAAAGGGTTCTTTGCACCGTAAATAGGCTTCTC----CCCAAACTGTGCCATGAG 74578 | || || |||||| | | ||| | ||| || |||| | | | || Sbjct 30869 AAATCAAAGGGGTTCGACGACCTGTACAC---CTTTTCGTTGCCCAGGGCGA-CTAGAAG 30814 Query 74579 GCGATCCGCCACAAATTGAATGTACTGCGTCATTTCTCCCGCATCCATGCCGATGAGTTT 74638 ||| || || || || | || |||||| |||| || | |||||||| | | Sbjct 30813 GCGGTCGGCAACGAACTCGATATACTGCTTCATCAAGGTGGCGTTCATGCCGAGTAATGC 30754 Query 74639 GCACGGCAGTGCCTCGGTGATAAACTCACTCTCCACCTCGCAAGCCCATTGGACA--ATC 74696 ||| ||||| || ||||||| ||| || || | | | | ||| || | || Sbjct 30753 GCAGGGCAGGGCTTCGGTGAGAAATTCTTGTTCGA--TGGTGACGGCATCGGTGATGATG 30696 Query 74697 TTGTGAATGTC---TTTGGAAGGGCACTTTTCCCTCAGGTGAGAGTAAAGC-GTCACGGC 74752 | || ||| | |||| | | |||| | | ||| |||| || | || ||| Sbjct 30695 TCATGGATGACCTGTTTGCTGGCCCGGTTTT---TGAAGTGCGAGTGTAGGAGACA-GGC 30640 Query 74753 AAACTCCTGATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGG 74812 ||| ||| ||| | || ||||||| || | ||| || ||||| | | |||||| Sbjct 30639 AAAATCCGTGTGCAAACCCTCATCTCGCGAAATGAGTTCGTTGGAAAAGGTCAAGCCAGG 30580 Query 74813 CATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCC 74872 ||| || ||||| ||||| | ||| ||||||| |||| |||||||||||||||||| Sbjct 30579 CATTAGGCCACGTTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCACTGAAGAAGATGCC 30520 Query 74873 TTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAACG 74910 ||||| |||||||| || | |||||| || |||| Sbjct 30519 CTCGACCGCAGCAAAGGCTACCAAGCGTTGAGCAAACG 30482 >seq283 Length=63202 Score = 93.3 bits (102), Expect = 5e-14 Identities = 235/354 (66%), Gaps = 4/354 (1%) Strand=Plus/Minus Query 152758 ACGTGGAACATGTTGAGGACCAAGCCCTTGATGTGCGATCCGTCAAGATCCGCGTCGGTC 152817 || |||| | ||||| || | ||||||||||| ||||| ||||| || | | Sbjct 14203 ACTTGGAGGAAGTTGATGAGGAGACCCTTGATGTGGCTGCCGTCGTGATCCTGATCAGCC 14144 Query 152818 ATGATCATCAGACGACCGTAGCGCAGGTCACGTAGTGACCCGTAGACCTTTCCATGT--T 152875 || ||||| ||| |||| ||||||| | | | ||||| | || || || | ||| | Sbjct 14143 ATAATCATGAGATGACCATAGCGCAAG-CTCTTAGTG-TCAGTGTACACTTGCTTGTGCT 14086 Query 152876 GAAGCCCGAGGATCTTTTTGAGGTTGGAAAATTCCTCATTATCGGTCACCTGTTTCACCG 152935 ||||| |||| || |||| ||| | || | || | ||| | ||| | |||| Sbjct 14085 TGAGCCCCAGGAACTGCTTGATGTTTTGGATCTCTTGGTTCTTGGTGATCTGATCGACCG 14026 Query 152936 TGGCATCCCGAACATTGCGCGGCTTTCCCCGGAGTGGAAACACGCCGAACGCGTTGCGGC 152995 |||||| | || ||| || |||| || || || ||||| ||||||| | || | || Sbjct 14025 AGGCATCTCTGACGTTGAGCAGCTTGCCTCGAAGCGGAAAGACGCCGATCCGGTCGGGGT 13966 Query 152996 CTACAACGCTCAGACCGGCAATAGCAAGGGCTTTCGCCGAGTCACCCTCGGTGATAATAA 153055 | | | | | |||| || ||| || | || || ||||| || ||||| | || | Sbjct 13965 CCAGGATATTTCGCCCGGAAACAGCCAGACCCTTGGCAGAGTCGCCTTCGGTTAAGATCA 13906 Query 153056 GCGTACAGTCGTGAGACCGATGAGTACCGGCCCAGTTGGCGTCGTCAAGCTTGG 153109 | || || || || || | ||||| ||| ||||||| ||| | ||||||| Sbjct 13905 GTGTGCACTCATGTCCACGTTTTGTACCCGCCAAGTTGGCCTCGACGAGCTTGG 13852 Score = 84.2 bits (92), Expect = 2e-11 Identities = 198/299 (66%), Gaps = 0/299 (0%) Strand=Plus/Minus Query 152026 CGCGTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAAC 152085 ||||| ||||| ||||||| || || ||||| ||| || || || | ||||| Sbjct 14941 CGCGTAAAGATATATCGGGGACTTGCGGCATCAGAGCCTCCCTTGAGTCGGGAACCAAAG 14882 Query 152086 TGTCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTC 152145 | || ||||| || |||| ||| || | || || || | || |||| Sbjct 14881 TTGCCGCTTGGCTCAAGACAATTGACGTTATTCGATCCAACAAAGTCTTGGGCCAGGCCG 14822 Query 152146 ACAATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTAT 152205 | ||| || |||||| ||||||||||| || || |||||||| |||| | ||| Sbjct 14821 ATAATGGTCTGCTGCAGTGAGGCTTCACCGTGATGGTATGCCGTCTGTTCCGATACGTAA 14762 Query 152206 CCCGCCAACTGCGCCACCTTCATGTCCGTCGTCAGGTTCTTCTTGAGACAGGCGTAAATC 152265 ||||| | | | |||||||| ||||| | | ||| ||||| ||| || || || Sbjct 14761 CCCGCTAGTTCCACCACCTTCCTGTCCTTGACCGCGTTTCGCTTGAAACACGCATAGATG 14702 Query 152266 ACCTTGCGCTGGGATGGTTTCAAACCGTCCACCACGTGAGGAATCGAACGCTTGATGTC 152324 |||||||| || || || || ||||| | || |||||||| ||| || |||| Sbjct 14701 ACCTTGCGTTGACCAGGCTTGAAGCCGTCGAGAACAGATGGAATCGATCGCATGTTGTC 14643 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547207921723800