Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cerataphis_20brasiliensis_20yeast- like_20symbiont_20[genbank_20GCA_5F000372705.1_202013-04-22] 1,181 sequences; 25,465,455 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq677 289 3e-73 seq598 167 3e-36 seq574 161 1e-34 seq283 127 2e-24 >seq677 Length=7370 Score = 289 bits (320), Expect = 3e-73 Identities = 931/1424 (65%), Gaps = 43/1424 (3%) Strand=Plus/Plus Query 80356 AACTCTCCCGCGAGGGTGCGACGCAGATACAGGTTTGTAGTGTAAGGCTCAAATGCCTCG 80415 ||||| ||||| || ||| ||| | || | ||| | ||||||||||| || |||| Sbjct 4858 AACTCGCCCGCCAGCACGCGTCGCTGGTAAATGTTGGACGTGTAAGGCTCGAAGCACTCG 4917 Query 80416 TTGTTTCCGAGGATCTGAGCCGTGCTCGCCGTCGGCATCGGGCCGACCAACAGTGAATTC 80475 || || ||||||||||| | |||||| ||||||||||| ||| | |||| ||| || Sbjct 4918 TTATTGCCGAGGATCTGCGACGTGCTGGCCGTCGGCATGGGGGCTACCAGCAGACTGTTG 4977 Query 80476 CGCAGGCCGTGCTTCTTGATATCCTCGCGCAAATCTGACCAAAAATCAACCCC--AACGC 80533 || | ||| |||| |||||| | ||| || | | ||| | | | || || Sbjct 4978 CGTATGCCATGCTCCTTGATCTGCTCCCGTAGCGTTTCCCACTCCCAGAGCTCTGAAGGC 5037 Query 80534 TGTGACC--CCACATGTCGTGCTGCAAGATGCCCTCCGACGCCGGAGACCCCGCGAACGT 80591 | | ||| ||||||||| ||| | | ||||||||||||||| || ||| |||| Sbjct 5038 T-TCACCTTCCACATGTCAAACTGGAGCACGCCCTCCGACGCCGGCGATCCCTTAAACGA 5096 Query 80592 CTCGTACGGGCCCTCCG-TCTTGGCCAGCTCACACGACTCCATAAGGGCCGCGTGATAAA 80650 | ||| ||||||| || ||||||||||||| ||| | | | ||| ||||| || | Sbjct 5097 CGAGTA-GGGCCCTTCGCTCTTGGCCAGCTCCATCGAGGCACTCAAGGCGGCGTGGTAGA 5155 Query 80651 TGCACTCAAAGACGCCCTTGTTCACACCGCGCGCCTGTGGGTCGTCGAACGACAAGCCCA 80710 || || |||| || ||| | | || |||| || || |||| || || | Sbjct 5156 TGGTTTCGAAGATTTGCTGGTTTAGCTCCCGGGCCTCCGGAGACTCAAACGGCATGCGGA 5215 Query 80711 TCATCATGAACACGTCAGCCAGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGT 80770 || || | || ||||||||||| || || | | ||||| ||||| ||| ||| Sbjct 5216 GAGCCAGAAAAGCATCGGCCAGGCCCTGGACACCCACACCAATCGGCCGGTGCCGCATGT 5275 Query 80771 T-CGATCGCTCGGCCTCCGGAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTG 80829 | | | || |||||| || ||||||| ||| ||||||| | || ||||| Sbjct 5276 TGCTGTTGCG-GGCCTCTTCAACTGGGTAATGGTTGACGTCGATGATCCTATTGAGGTTA 5334 Query 80830 CGTGTAACAACCCGTGTAACATCATGAAGTTTCTGAAAGTCGAATTGG-----TTCCCCT 80884 || |||||| | || || || || || ||||| |||||| | | ||| Sbjct 5335 CGGACGACAACCTGCGTCACCTCGTGGAGCTTCTGGAAGTCGTAGCAGCCCTGTTCATAG 5394 Query 80885 TC-ACAAATGCCGGAAGGCTCAGGGACGCCAGATTGCACACGGCCACCTCTTCAGCATCT 80943 || ||||| || || ||| || || ||||||||||| ||||| || || |||| | Sbjct 5395 TCGACAAAGGCAGGCAGGGCTAGTGAGGCCAGATTGCAGACGGCGACTTCGTCAGGTGCC 5454 Query 80944 GTAAACTCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGG 81003 | ||||||||||||||||||| | || ||| | ||| || |||||||| || || Sbjct 5455 GAGTACTCGACGATTTCCGTGCAAAGGTTCGAACTCCGAATGGTGCCCAGGTTCTTTTGA 5514 Query 81004 TTTGACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGT 81063 || |||| |||||| ||||||||| ||| | || | || || || |||| Sbjct 5515 TTACTCTTGCGGTTGCAGTGGTCCTTGTACAGCATAAAGGGATTGCCCGTTTCCGTCTGT 5574 Query 81064 GACTTGAGGATGGCGTCCCAAATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCG 81123 | | ||||| | | ||| | || | ||| ||| ||||||| ||| ||| Sbjct 5575 GCTTCCAGGATAGAATACCAGAGCTTCTGAGCCCGCACCGTCTTGCGGCCACGGCCCTCG 5634 Query 81124 GCCACATACTTGGCGTAAGCTTCGTCGAACTTGGCACCGT-GAAGTTCAGTGAGGTCTGG 81182 | | ||||| |||| | || || | |||||| | || || | ||| | || Sbjct 5635 CGCTCGTACTTTTCGTACAGAGCCTCAAATTCATCACCGTAGCAG-TCGGCCAGGCCGGG 5693 Query 81183 GCACTCGTTAGGGCACATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGC 81242 ||| ||||| |||||||| || ||| ||| || ||||| || ||||||||| Sbjct 5694 GCATTCGTTGGGGCACATGAGCGTCCAATCGCCGTTTTTCTCCACGCGCTTCATGAACAG 5753 Query 81243 GTCAGGGATCCAGAGGGCGGTGAACAGGTCGCGGCAGCGCGCCTCCTCATCACCCTGGTT 81302 ||| || ||||| ||||| ||| ||||||||| || ||||||| | || ||||| Sbjct 5754 GTCCGGAATCCACAGGGCCAGGAAGAGGTCGCGGGCCCGAACCTCCTCCTTGCCATGGTT 5813 Query 81303 GAGGCGCAACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGAT 81362 ||||| || ||||| || | | || || ||||| ||||||| || | ||| | Sbjct 5814 CTTGCGCAGATCCAGAAACTCAAACACATCGGCGTGCCACGGCTCCAAGTATATGGC-AA 5872 Query 81363 CGACCCCTTGCGAC----GGCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACAC 81418 | | ||| || | ||| ||||||| |||||| ||||| || ||| || |||| Sbjct 5873 AGGCACCTGGCCGCTTGTTGCCGCCCTGGTCGACGTAGCGGGCCGTATTGTTGAAGACAC 5932 Query 81419 GCAACATAGGGATGATACCATCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGG 81478 | | ||| || |||| ||| | || ||||| || || | || || || | | Sbjct 5933 GAAGCATGGGAATGACACCGTTCGAAGTCCCGTTGGTGCCGGCAATGTAAGAACCGGTAG 5992 Query 81479 CGCGCA--CCTTGCTGATTGAAAGACCGATGCCACCTGACCACTTTGAAATCTGAGCACA 81536 | || | | ||| ||| || |||||||| || | | ||| || ||| || || Sbjct 5993 CACGGATCCGATGCACGTTG--AGCCCGATGCCGCCGGCCATCTTGGAGATCATGGCGCA 6050 Query 81537 CCGGTTCATGGTCTCATAAATTCCCTCGATGCTATCTTTTTTCATGTC-------AAGCA 81589 || | || || || || ||||||||||| || | |||||||| ||||| Sbjct 6051 TGTCTTGAGCGTGTCGTAGATGCCCTCGATGCTGTCCTCCTTCATGTCAACGAGGAAGCA 6110 Query 81590 AGA-AACAGCTTGACATCTGAGGGCTTTTTGAGCCGGCATTGAACAGTGTTGGGGTCGCG 81648 || | ||| ||||| |||||| | |||||| |||||||| || || | ||| Sbjct 6111 CGACGAAAGC-TGACA-CTGAGG------CGTGCCGGCGTTGAACAGCGTCGGCGACGCA 6162 Query 81649 TGAATGAAATAACGGTTTGACATCAGGTCATAGGTTTCCTTGACGCGTGGAATATCGTCA 81708 || |||| | | | ||||| |||| || || || ||| || |||| | | Sbjct 6163 TGGGTGAAGAACTTGCTGGACATGAGGTTGTACGTCTCGAGGACTCGGTCGATATTGCCG 6222 Query 81709 CCGTGAATACCGATAGCTACACGCATAAACATGTACTG-GGGCG 81751 || ||||| | || || ||||| | ||||| || ||||| Sbjct 6223 CCCCATATACCCACGGCAACGCGCATGATCATGTGTTGAGGGCG 6266 >seq598 Length=71582 Score = 167 bits (184), Expect = 3e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| || ||||||||| | || |||||||| || ||||| || || || || Sbjct 950 ATGCAAATATTCGTCAAGACGTTGACTGGCAAGACGATCACTCTGGAAGTCGAATCGTCC 1009 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| ||||| | || ||||||||||||||||| ||||| || || || Sbjct 1010 GACACCATCGATAATGTGAAGTCAAAGATTCAGGACAAGGAGGGCATTCCCCCGGATCAA 1069 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || |||||||||||||| |||||||||| ||| || || | ||||| ||| Sbjct 1070 CAGCGCCTGATCTTTGCTGGTAAGCAGCTCGAGGATGGTCGAACTCTGTCCGACTACAAT 1129 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || || || ||||| | ||||| ||| | ||| | ||||| || Sbjct 1130 ATTCAGAAAGAGTCCACGTTGCATCTTGTCCTTCGTTTGCGCGGCGG 1176 Score = 158 bits (174), Expect = 1e-33 Identities = 175/231 (76%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||||||||||||||| || || || ||||| ||||| | || ||||| || Sbjct 1406 ATGCAAATCTTTGTCAAGACTCTGACGGGAAAGACGATTACCTTGGAAGTTGAATCTTCG 1465 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| |||| || ||||| | ||||| || |||||||| || |||||||| ||||| Sbjct 1466 GATACGATTGACAACGTGAAGTCGAAAATACAAGACAAGGAAGGCATTCCTCCCGACCAA 1525 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584 ||||| || || |||||||| || ||||| || |||| ||||| || ||| |||||||| Sbjct 1526 CAGCGCCTCATATTTGCTGGAAAACAACTGGAAGATGGACGTACTCTGAGC-GACTATAA 1584 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635 | || || ||| |||| | || || || |||| || || |||||||| Sbjct 1585 CATTCAGAAAGAAAGCACTTTGCACCTTGTGCTGCGCCTCCGTGGTGGACA 1635 Score = 152 bits (168), Expect = 6e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| |||||||| | ||||||||||| ||||| | || || || || Sbjct 1178 ATGCAAATCTTCGTCAAGACATTAACCGGCAAGACGATTACGTTGGAAGTCGAATCGTCC 1237 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || | ||| | || |||||||| |||||||| || ||||| |||||| Sbjct 1238 GACACCATCGACAACGTCAAGTCCAAGATTCAGGATAAGGAGGGCATCCCTCCTGACCAG 1297 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || || ||||| || ||||| ||||||| || ||||| | ||||| || Sbjct 1298 CAGCGCCTGATATTCGCTGGAAAACAACTTGAGGATGGCCGGACCCTCTCTGACTACAAC 1357 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| || || |||||| | || || ||| ||||||| || || || Sbjct 1358 ATCCAGAAAGAGTCCACTTTGCACCTCGTCCTGCGTCTGCGTGGAGG 1404 Score = 123 bits (136), Expect = 3e-23 Identities = 149/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489 || |||||||| || ||||||||||| ||||| ||||| || | ||| | ||| | Sbjct 746 ACTGGCAAGACGATCACTCTTGAGGTAGAGTCGTCTGATACTATCGATAATGTCAAGTCC 805 Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 || || |||||||||||||| |||||||| ||||| || || | || ||||| || || Sbjct 806 AAGATCCAGGACAAGGAGGGTATTCCTCCCGACCAACAACGCTTGATCTTTGCCGGAAAA 865 Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609 || | ||||||| | ||||| | ||||| ||| | || || || || || || ||| Sbjct 866 CAGTTGGAGGATGGCAGGACCCTGTCCGACTACAATATTCAGAAAGAGTCAACGCTACAT 925 Query 27610 CTAGTCTTGCGTCTTCGCGGTGG 27632 || ||| | || | |||||||| Sbjct 926 CTTGTCCTTCGCTTGCGCGGTGG 948 >seq574 Length=30825 Score = 161 bits (178), Expect = 1e-34 Identities = 174/228 (76%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| ||||| || || || || ||||| || || |||||||| ||||| | Sbjct 26795 ATGCAGATCTTCGTCAAAACCCTCACGGGGAAGACAATCACCCTTGAGGTGGAGTCTTCT 26736 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || | ||| | || |||||||| |||||||| ||||| || |||||| Sbjct 26735 GACACCATCGATAACGTCAAGTCCAAGATTCAGGATAAGGAGGGCATTCCCCCCGACCAG 26676 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584 ||||| || || ||||| || ||||| ||||| |||| || ||| | ||| ||||| || Sbjct 26675 CAGCGCCTCATCTTTGCCGGAAAGCAGCTCGAAGATGGCCGAACCATGAGC-GACTACAA 26617 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| |||||| || || ||| |||| ||||||||||| Sbjct 26616 CATCCAGAAGGAGAGCACTCTGCACCTCGTCCTGCGCCTTCGCGGTGG 26569 >seq283 Length=63202 Score = 127 bits (140), Expect = 2e-24 Identities = 232/332 (70%), Gaps = 6/332 (2%) Strand=Plus/Plus Query 31210 AAGCTCGACGACGCCAACTGGGCCGGTACCCACAAGTCG-CACGAGTGCACGCTTATTAT 31268 ||||||| ||| ||||||| ||| ||||| | | || | || |||||||| || || | Sbjct 13854 AAGCTCGTCGAGGCCAACTTGGCGGGTACAAA-ACGTGGACATGAGTGCACACTGATCTT 13912 Query 31269 TACCGAGGGTGACTCGGCAAAGGCGCTTGCTATTGCTGGCTTGAGTGTTGTGGGGCGCAA 31328 ||||| || ||||| || |||| || ||| || | || | | | ||| | | | Sbjct 13913 AACCGAAGGCGACTCTGCCAAGGGTCTGGCTGTTTCCGGGCGAAATATCCTGGACCCCGA 13972 Query 31329 TGCGTTCGGGGTGTTTCCGCTCCGAGGCAAGCCGCGTAACGTTCGTGACGCCTCCGTTAA 31388 | |||| || |||||||| |||||||||| || ||||| | || ||||| || | Sbjct 13973 CCGGATCGGCGTCTTTCCGCTTCGAGGCAAGCTGCTCAACGTCAGAGATGCCTCGGTCGA 14032 Query 31389 ACAGGTTACGGATAATGAAGAGTTTTCCAACCTGAAAAAGATCCTCGGGCTTCAGCATG- 31447 ||| | || | || ||||| | ||| | || || |||| ||||| |||| Sbjct 14033 TCAGATCACCAAGAACCAAGAGATCCAAAACATCAAGCAGTTCCTGGGGCTCAAGCACAA 14092 Query 31448 GCAAGGTATATAATT-CACTGAGAGAATTGCGGTACGGTCGCCTCATGATTATGACCGAC 31506 ||||| | || | | |||| |||| ||||| || |||| |||||||||||| | || Sbjct 14093 GCAAG-TGTACACTGACACTAAGAGC-TTGCGCTATGGTCATCTCATGATTATGGCTGAT 14150 Query 31507 GCAGATCTCGACGGCAGTCACATCAAGGGTCT 31538 |||| ||||||||| |||||||||||||| Sbjct 14151 CAGGATCACGACGGCAGCCACATCAAGGGTCT 14182 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570301980792720