Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cerataphis_20brasiliensis_20yeast- like_20symbiont_20[genbank_20GCA_5F000372705.1_202013-04-22] 1,181 sequences; 25,465,455 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq598 98.7 9e-16 seq574 84.2 2e-11 >seq598 Length=71582 Score = 98.7 bits (108), Expect = 9e-16 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 39088 GTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCC 39147 ||||| ||||| || || ||||| ||| || || ||| | || || || ||||| || Sbjct 1602 GTGCTTTCTTTCTGAATGTTATAGTCGCTCAGAGTACGTCCATCTTCCAGTTGTTTTCCA 1543 Query 39148 GCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTG 39207 |||||||| || ||||| ||||||| || | || || ||||| |||||| || Sbjct 1542 GCAAATATGAGGCGCTGTTGGTCGGGAGGAATGCCTTCCTTGTCTTGTATTTTCGACTTC 1483 Query 39208 AGCGTCGCCAC-CGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGT 39266 | ||| | || |||||| || || || |||| || || | ||||||||||| || Sbjct 1482 A-CGTTGTCAATCGTATCCGAAGATTCAACTTCCAAGGTAATCGTCTTTCCCGTCAGAGT 1424 Query 39267 TTTAACAAAGATTTGCAT 39284 || |||||||||||||| Sbjct 1423 CTTGACAAAGATTTGCAT 1406 >seq574 Length=30825 Score = 84.2 bits (92), Expect = 2e-11 Identities = 142/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 39082 TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGT 39141 || || |||||||| || || || || || ||| | ||||| | || || ||||| Sbjct 26593 TGCAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCTCATGGTTCGGCCATCTTCGAGCTGC 26652 Query 39142 TTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTC 39201 || || ||||| || || ||||||||||||| ||| | || ||| || ||| || || Sbjct 26653 TTTCCGGCAAAGATGAGGCGCTGCTGGTCGGGGGGAATGCCCTCCTTATCCTGAATCTTG 26712 Query 39202 TGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTC 39261 |||| | | | || || |||||||| || | ||||| | || ||||| Sbjct 26713 GACTTGACGTTATCGATGGTGTCAGAAGACTCCACCTCAAGGGTGATTGTCTTCCCCGTG 26772 Query 39262 AGCGTTTTAACAAAGATTTGCATCTT 39287 || ||||| || ||||| |||||||| Sbjct 26773 AGGGTTTTGACGAAGATCTGCATCTT 26798 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429539417362253