Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cerataphis_20brasiliensis_20yeast- like_20symbiont_20[genbank_20GCA_5F000372705.1_202013-04-22] 1,181 sequences; 25,465,455 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq598 105 5e-18 seq1010 86.0 4e-12 seq574 82.4 5e-11 >seq598 Length=71582 Score = 105 bits (116), Expect = 5e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || || || || |||||||| ||||| || | |||||||| || || Sbjct 1406 ATGCAAATCTTTGTCAAGACTCTGACGGGAAAGACGATTACCTTGGAAGTTGAATCTTCG 1465 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || |||| | | || ||||| ||||| ||||| | || || || ||| Sbjct 1466 GATACGATTGACAACGTGAAGTCGAAAATACAAGACAAGGAAGGCATTCCTCCCGACCAA 1525 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| | |||||||| || |||||||||||||| | ||| ||| | |||| || ||| Sbjct 1526 CAGCGCCTCATATTTGCTGGAAAACAACTGGAAGATGGACGTACTCTGAGCGACTATAAC 1585 Query 23791 ATACAAAAAGA 23801 || || ||||| Sbjct 1586 ATTCAGAAAGA 1596 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || ||||| || || | || || || ||||||||||| ||||| || || | Sbjct 950 ATGCAAATATTCGTCAAGACGTTGACTGGCAAGACGATCACTCTGGAAGTCGAATCGTCC 1009 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || | ||| ||| ||||| || || | || || ||||| Sbjct 1010 GACACCATCGATAATGTGAAGTC-AAAGATTCAGGACAAGGAGGGCATTCCCCCGGATCA 1068 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || ||||| || || || || || || | || ||| | ||| ||||| Sbjct 1069 ACAGCGCCTGATCTTTGCTGGTAAGCAGCTCGAGGATGGTCGAACTCTGTCCGACTACAA 1128 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || || ||||||||||| || ||| | || | | ||||| || || Sbjct 1129 TATTCAGAAAGAGTCCACGTTGCATCTTGTCCTTCGTTTGCGCGGCGG 1176 >seq1010 Length=27177 Score = 86.0 bits (94), Expect = 4e-12 Identities = 129/181 (71%), Gaps = 2/181 (1%) Strand=Plus/Minus Query 23619 TTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGT 23678 |||||| || ||||| ||||| || || ||||| ||||| || || || ||||||| | Sbjct 25696 TTTCGTAAAGACCCTAACGGGCAAGACCATCACCCTCGAGGTCGAGTCGTCGGACACGAT 25637 Query 23679 TGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTT 23737 || ||| | ||| | || | || || || || || | || || |||||||| || Sbjct 25636 CGATAATGTCAAATCCAAGA-TTCAGGATAAGGAGGGCATTCCTCCGGATCAACAACGAC 25578 Query 23738 TAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAA 23797 | || || |||||||| || || || |||| || || | |||||||||||| |||| Sbjct 25577 TGATCTTCGCCGGCAAGCAGCTTGAGGACGGCCGAACGCTGTCCGATTACAACATCCAAA 25518 Query 23798 A 23798 | Sbjct 25517 A 25517 >seq574 Length=30825 Score = 82.4 bits (90), Expect = 5e-11 Identities = 135/195 (69%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||| ||||| |||||||||||||| || || ||||| || || || || || Sbjct 26798 AAGATGCAGATCTTCGTCAAAACCCTCACGGGGAAGACAATCACCCTTGAGGTGGAGTCT 26739 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | ||||| | || | | || || ||| || || || || | || || || Sbjct 26738 TCTGACACCATCGATAACGTCAAGTCCAAGATTCAGGATAAGGAGGGCATTCCCCCCGAC 26679 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || ||||| | || |||||||| || || || ||||| | || || | |||| ||| Sbjct 26678 CAGCAGCGCCTCATCTTTGCCGGAAAGCAGCTCGAAGATGGCCGAACCATGAGCGACTAC 26619 Query 23788 AACATACAAAAAGAG 23802 ||||| || || ||| Sbjct 26618 AACATCCAGAAGGAG 26604 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338004734879948