Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cerataphis_20brasiliensis_20yeast-
like_20symbiont_20[genbank_20GCA_5F000372705.1_202013-04-22] 1,181 sequences; 25,465,455 total letters
Query= NC_029997.1
Length=105667
Score E
Sequences producing significant alignments: (Bits) Value
seq598 105 5e-18
seq1010 86.0 4e-12
seq574 82.4 5e-11
>seq598
Length=71582
Score = 105 bits (116), Expect = 5e-18
Identities = 138/191 (72%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
||||| || || || || || || |||||||| ||||| || | |||||||| || ||
Sbjct 1406 ATGCAAATCTTTGTCAAGACTCTGACGGGAAAGACGATTACCTTGGAAGTTGAATCTTCG 1465
Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730
|| || |||| | | || ||||| ||||| ||||| | || || || |||
Sbjct 1466 GATACGATTGACAACGTGAAGTCGAAAATACAAGACAAGGAAGGCATTCCTCCCGACCAA 1525
Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790
||||| | |||||||| || |||||||||||||| | ||| ||| | |||| || |||
Sbjct 1526 CAGCGCCTCATATTTGCTGGAAAACAACTGGAAGATGGACGTACTCTGAGCGACTATAAC 1585
Query 23791 ATACAAAAAGA 23801
|| || |||||
Sbjct 1586 ATTCAGAAAGA 1596
Score = 93.3 bits (102), Expect = 3e-14
Identities = 159/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
||||| || ||||| || || | || || || ||||||||||| ||||| || || |
Sbjct 950 ATGCAAATATTCGTCAAGACGTTGACTGGCAAGACGATCACTCTGGAAGTCGAATCGTCC 1009
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
||||| | || ||| | || | ||| ||| ||||| || || | || || |||||
Sbjct 1010 GACACCATCGATAATGTGAAGTC-AAAGATTCAGGACAAGGAGGGCATTCCCCCGGATCA 1068
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
|||||| | || ||||| || || || || || || | || ||| | ||| |||||
Sbjct 1069 ACAGCGCCTGATCTTTGCTGGTAAGCAGCTCGAGGATGGTCGAACTCTGTCCGACTACAA 1128
Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837
|| || ||||||||||| || ||| | || | | ||||| || ||
Sbjct 1129 TATTCAGAAAGAGTCCACGTTGCATCTTGTCCTTCGTTTGCGCGGCGG 1176
>seq1010
Length=27177
Score = 86.0 bits (94), Expect = 4e-12
Identities = 129/181 (71%), Gaps = 2/181 (1%)
Strand=Plus/Minus
Query 23619 TTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGT 23678
|||||| || ||||| ||||| || || ||||| ||||| || || || ||||||| |
Sbjct 25696 TTTCGTAAAGACCCTAACGGGCAAGACCATCACCCTCGAGGTCGAGTCGTCGGACACGAT 25637
Query 23679 TGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTT 23737
|| ||| | ||| | || | || || || || || | || || |||||||| ||
Sbjct 25636 CGATAATGTCAAATCCAAGA-TTCAGGATAAGGAGGGCATTCCTCCGGATCAACAACGAC 25578
Query 23738 TAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAA 23797
| || || |||||||| || || || |||| || || | |||||||||||| ||||
Sbjct 25577 TGATCTTCGCCGGCAAGCAGCTTGAGGACGGCCGAACGCTGTCCGATTACAACATCCAAA 25518
Query 23798 A 23798
|
Sbjct 25517 A 25517
>seq574
Length=30825
Score = 82.4 bits (90), Expect = 5e-11
Identities = 135/195 (69%), Gaps = 0/195 (0%)
Strand=Plus/Minus
Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667
|| |||||||| ||||| |||||||||||||| || || ||||| || || || || ||
Sbjct 26798 AAGATGCAGATCTTCGTCAAAACCCTCACGGGGAAGACAATCACCCTTGAGGTGGAGTCT 26739
Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727
| ||||| | || | | || || ||| || || || || | || || ||
Sbjct 26738 TCTGACACCATCGATAACGTCAAGTCCAAGATTCAGGATAAGGAGGGCATTCCCCCCGAC 26679
Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787
|| ||||| | || |||||||| || || || ||||| | || || | |||| |||
Sbjct 26678 CAGCAGCGCCTCATCTTTGCCGGAAAGCAGCTCGAAGATGGCCGAACCATGAGCGACTAC 26619
Query 23788 AACATACAAAAAGAG 23802
||||| || || |||
Sbjct 26618 AACATCCAGAAGGAG 26604
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 338004734879948
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |