Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cerataphis_20brasiliensis_20yeast- like_20symbiont_20[genbank_20GCA_5F000372705.1_202013-04-22] 1,181 sequences; 25,465,455 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq677 127 3e-24 seq780 96.9 5e-15 >seq677 Length=7370 Score = 127 bits (140), Expect = 3e-24 Identities = 397/610 (65%), Gaps = 6/610 (1%) Strand=Plus/Plus Query 77760 ATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTATTGCATGAGTCCTTATAAAGAATAAAC 77819 || |||||||| || | ||| || ||||| ||||| |||||| || || ||||| Sbjct 5494 ATGGTGCCCAGGTTCTTTTGATTACTCTTGCGGTTGCAGTGGTCCTTGTACAGCATAAAG 5553 Query 77820 GGAGTCCCGGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCT-AGCTTTTAT 77878 ||| | || ||||| |||||| ||| | ||||| | ||||| | ||| ||| | Sbjct 5554 GGATTGCCCGTTTCCGTCTGTGCTTCCAGGATAGAATACCAGA-GCTTCTGAGCCCGCAC 5612 Query 77879 CATAGATTTGTATCGCCTCTCTCTTTCATA--TTGAGTATATAGCCGTTCAAATTCATCT 77936 | | | || | ||| | || || || ||| | |||| ||||||||||| Sbjct 5613 CGTCTTGCGGCCACGGCCCTCGCGCTCGTACTTTTCGTACAGAGCC--TCAAATTCATCA 5670 Query 77937 CCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCT 77996 || | || ||| || |||||||| || |||||||| | | ||| || || | | Sbjct 5671 CCGTAGCAGTCGGCCAGGCCGGGGCATTCGTTGGGGCACATGAGCGTCCAATCGCCGTTT 5730 Query 77997 TCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTT 78056 | || || || ||||| || || || || ||||| || || | || || || |||| Sbjct 5731 TTCTCCACGCGCTTCATGAACAGGTCCGGAATCCACAGGGCCAGGAAGAGGTCGCGGGCC 5790 Query 78057 CTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGC 78116 | | || || || || ||||| ||||| |||||||| | | ||| | ||| Sbjct 5791 CGAACCTCCTCCTTGCCATGGTTCTTGCGCAGATCCAGAAACTCAAACACATCGGCGTGC 5850 Query 78117 CATGGTTCTAGATATATTGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATAT 78176 || || || | ||||| || | | || || || || || || ||||| || | || Sbjct 5851 CACGGCTCCAAGTATATGGCAAAGGCACCTGGCCGCTTGTTGCCGCCCTGGTCGACGTAG 5910 Query 78177 CTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTT 78236 | ||| || || || | || | | ||| ||||| | |||||| || || || || || Sbjct 5911 CGGGCCGTATTGTTGAAGACACGAAGCATGGGAATGACACCGTTCGAAGTCCCGTTGGTG 5970 Query 78237 CCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGATATCCCTATTCCTCCTGCC 78296 || | ||| ||| || | || || || | | | | ||| || || || ||| Sbjct 5971 CCGGCAATGTAAGAACCGGTAGCACGGATCCGATGCACGTTGAGCCCGATGCCGCCGGCC 6030 Query 78297 ATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCC 78356 ||||| || || | ||||| || | || |||||||| ||||| || ||||| ||| Sbjct 6031 ATCTTGGAGATCATGGCGCATGTCTTGAGCGTGTCGTAGATGCCCTCGATGCTGTCCTCC 6090 Query 78357 ATCATGTTAA 78366 |||||| || Sbjct 6091 TTCATGTCAA 6100 >seq780 Length=34333 Score = 96.9 bits (106), Expect = 5e-15 Identities = 176/257 (68%), Gaps = 3/257 (1%) Strand=Plus/Minus Query 48438 TCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATC 48497 |||||||| || || || || |||||||||||||| || || | || || | |||| Sbjct 30273 TCGGAGTGGATGTTCTCCATCATGATCTGAAATCCGTAGAAGCAACGGGCCTCGGGGATC 30214 Query 48498 TGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCA 48557 || ||||| | || || ||| |||| || || || || || || || || ||| Sbjct 30213 TGAACCTCGCCGCTGAACCGCTCAACCAAGTTTTCGTTGACGATGCCGTCCGAGGCGGCA 30154 Query 48558 AAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCA---GTTTATTCCAG 48614 ||||| || | | || || ||| || ||||||| | ||| | || |||||| Sbjct 30153 AAAAAGGCCAGGATGTGGGAAACAAAGTACTTTTCGTCATCATTCAGGCGGTTGTTCCAG 30094 Query 48615 TCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTT 48674 || | | || || || | ||| | ||| || ||||||||||| || |||||||| || Sbjct 30093 TCGTGCAAGTCCTTGGAGAGATCGATTTCCTCGGCTGTCCAAAAGGAGGCCTCTGCCTTC 30034 Query 48675 TTATACATATTCCATAT 48691 || ||||| | ||| || Sbjct 30033 TTGTACATTTGCCAAAT 30017 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694658544951840