Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cerataphis_20brasiliensis_20yeast- like_20symbiont_20[genbank_20GCA_5F000372705.1_202013-04-22] 1,181 sequences; 25,465,455 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq780 96.9 5e-15 >seq780 Length=34333 Score = 96.9 bits (106), Expect = 5e-15 Identities = 221/332 (67%), Gaps = 3/332 (1%) Strand=Plus/Minus Query 46852 GTTTCTATAGCATTAAAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATT 46911 ||||| |||||||| |||||| || | | || | || || | ||||||||| || Sbjct 30348 GTTTCAATAGCATTGAAGAGATAGGTCCGCTGGGCATTCTCCTTGATATATGTATCGATC 30289 Query 46912 AAAAGACTATACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACAT 46971 | || || | || || || ||||| || || |||||||||||||| || || Sbjct 30288 AGGAGGGAGTATGTCTCGGAGTGGATGTTCTCCATCATGATCTGAAATCCGTAGAAGCAA 30229 Query 46972 CTTGCTTCAGTAATCTGTACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATT 47031 | || || | ||||| ||||| | || || ||| ||| || || || || || Sbjct 30228 CGGGCCTCGGGGATCTGAACCTCGCCGCTGAACCGCTCAACCAAGTTTTCGTTGACGATG 30169 Query 47032 CCATCACTAGCAGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTC 47091 || || || |||||||| |||| | || || ||| || ||||| || | || Sbjct 30168 CCGTCCGAGGCGGCAAAAAAGGCCAGGATGTGGGAAACAAAGTACTTTTCGTCATCATTC 30109 Query 47092 A---GTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAAT 47148 | | || |||||||| | | || || || | ||| | ||| || |||||||| || Sbjct 30108 AGGCGGTTGTTCCAGTCGTGCAAGTCCTTGGAGAGATCGATTTCCTCGGCTGTCCAAAAG 30049 Query 47149 GACGCCTCTGCTTTTTTATACATATTCCATAT 47180 || |||||||| || || ||||| | ||| || Sbjct 30048 GAGGCCTCTGCCTTCTTGTACATTTGCCAAAT 30017 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712923875305920